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Query: HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMRRKNITWVWLLGAAFMVGCGKQVPENIIQPDRMENILYDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDSSMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALRENKPAVSLPGDTVDVWYDRKLYWLTDVPLANKVTFEIPADSNFKAKDAFLWSADYIFLSEGERRATMGFNILFDNDSVVGRVKDITCSGVQTLYIKPDSAFAIKSVNGFIYYMDSDSSTNKPGLIINNITLTRYHEPVDTMTVAGKDSLAVERRVGTDSMVTEKKADSIQSVDIRKNVPVRMNPREMKENNAADHSHPDRPQRIKRRNLast
1 -115.000HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali  100  1MMRRKNITWVWLLGAAFMVGCGKQVPENIIQPDRMENILYDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDSSMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALRENKPAVSLPGDTVDVWYDRKLYWLTDVPLANKVTFEIPADSNFKAKDAFLWSADYIFLSEGERRATMGFNILFDNDSVVGRVKDITCSGVQTLYIKPDSAFAIKSVNGFIYYMDSDSSTNKPGLIINNITLTRYHEPVDTMTVAGKDSLAVERRVGTDSMVTEKKADSIQSVDIRKNVPVRMNPREMKENNAADHSHPDRPQRIKRRN 325
2 -11.100HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  5  1.MKKLLLAMIAVAALISFAACDHNETYADQRDRELDSI--NAFLRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVIND................................................................................................................................................................................................................................... 95
3 -9.360PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  9  1.MKTGIRVTVYALLAMILFSCEHKELCFHHPHMVTLRVDFDFYPEEGESPIRFDFAGKDGGSVYRILCYNNDTESLLFRGMEGFDTHEGYT-DMMWGSCARNVEITELGLSYECISFADKDKVEWIESS------EHVITLYPAELICTYTYEVRNVKNMEYMTQACGSLS.......................................................................................................................................................... 216
4 -9.170PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  4  1MKIERLFIYCLLAGTSLLASCNSEDMTD--PVETLSEGMYPLTFTAMQGEVVATPQTRVSDY------DTDGKHKSKWDGG---------------EVI--GVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYG------YPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEH--------------------------QLVKFR--VKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAM................................................ 221
5 -8.810PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;  ali follow..  5  19TQKKHNLIILVSCFLLLAGACDNSDRIETETQANGVLLNFNASTIDATTTETRSFVPIEGFAKNEYIFNASGTVVTPRGKPLRVIAYYP--AIAGTENFTDGIPFDFTQTNNPQQKEILYNTNTSYTIPSSGGSDKVTIPLKFQHAYSWISIKVTKSVDKGSHKLSGVSIDNLSGGWIKNKGKINPATGMAMQGAIQGPIGEVRTAEVLDPSGDTATPIIYD---FLVPAFMDRNVKDDDLVFT................................................................................. 303
6 -8.540PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  8  1MIKFLSFIASFFMVSFVITSCLDDDNNIEYSPDAT---IHAFALDTAGLGSYKFTIDQLS----REIYNEDSLP----------VHADTIIDKILIKTLTT------ASGVVTMKDKSGNDSVININDSIDLREPLTIKVWSTEALAQTKEYTIKVNVHQHDPDSLRWNHVGKMQDEIIGEQKTILTYSVVEGKNLKVYQNSNYSNWTAAGTNTTGDLTSTLPNSILPLNGIILATANNKVYEST................................................................................ 234
7 -7.920HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  8  7TLGMTKACLCALAVSLVTTGCSDKEPPSAISDGSFWTGEGDAMLASSNTVATNSNLRWYWGNAYTQIKKEQWSAEVKCLRAYFFLSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRG................................................................................................................................................................................................................ 209
8 -7.120PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;  ali follow..  8  1MHKQMIKYIATLLLTVLFVACNNGKNEDPKAKEILQGIWLD---------------------------DETETPLMRIIGDTIYYSDAQSA----FKILKDTLYTYGKDVTHYQIDKQSEYSFWFHSLADNIIKLHKSEDPNDTLAFSFKS-VTKKDSVVMDGVRYRAYVYI------NPSQMKVVKTTYSEDGISMD--NIYYDNVMHICVYEGKKSLYAKDITKQMFVDVIPTDFLQQAILSDMNFIGIDRKG...................................................................... 237
9 -6.630PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  8  1.MKYVKILFAMALVLTMCSAFSLKKGHS-ASFTDTVVYFTDIQILDSAKVSKEGFLTHRDL--YSYQLKNYDNGLQQNSTCMIYFSENRKKLEKEATKILSKYKRNRN......................................................................................................................................................................................................................... 115
10 -6.370HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  8  1.MRKLVLCLIAYPIISIVSSCSE---EEDCSMNARPMMQCYLY------KIDGETERVVNDTLDSLTITAFGTDSIILNNQKR------------VHGLSLPLRYTADSTVLVFHYSKDVKIKK---DTIVIRQKNTPYFLSMD-----YQMKQSITGRSYSRHLL--------------------------DSIYIQTAEVSIYGTENLKL................................................................................................................. 162
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;