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Query: HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKLLLAMIAVAALISFAACDHNETYADQRDRELDSINAFLRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVINDGCGDYIAKGKTQNVLCRFTEYCLANRAKICDDAITLTNDVPAWAAMTDEISVKNTSGTFEGYFVDIKKSLLANTYNSSYYGTVSATVPSGWLIPFTWIKVGRLITADDELAHVRLLVPHTYGTTSASASVYACLYDIRFQAARLast
1 -114.000HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali  100  1MKKLLLAMIAVAALISFAACDHNETYADQRDRELDSINAFLRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVINDGCGDYIAKGKTQNVLCRFTEYCLANRAKICDDAITLTNDVPAWAAMTDEISVKNTSGTFEGYFVDIKKSLLANTYNSSYYGTVSATVPSGWLIPFTWIKVGRLITADDELAHVRLLVPHTYGTTSASASVYACLYDIRFQAAR 238
2 -13.700PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  6  1MKTGIRVTVYALLAMILFSCEHKEDWKNAPQADPEGMCVYF---------------------PEEGESPIRFDFAGKDGGSVEIKEGRYRILCYNNDTESLLFRGMEGF................................................................................................................................. 104
3 -11.400PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  13  13IFKALALCLFAAVSFTFVSCDDDPVPNKVTKGQTVEIRCELKKTG---FANTLYTIRYFQFEGEGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDEAHNNFGNSYELEFDFN............................................................................................................................ 145
4 -11.300PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;  ali follow..  15  1MHKIKQMIATLLLTVLFVACNNGKGQQPSEENEDPKAKEILQ-----------------------------LDDETETPLMRIIGDTIYY--------------DAQSAPVYFK............................................................................................................................ 78
5 -11.200PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  8  1MKRNYFFTMLAAVLLAVAGANAQESAEFRPAEPSNTFKVLSDDGRIVNFTMIPGKDAIITGYGT----------------YQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGV........................................................................................................................ 124
6 -11.100HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  5  2MRRKNITWVWLLGAAFMVGCGKQVPENIIQPDRMENIDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDSSMVWYTRHTEELASLYKK............................................................................................................................................... 98
7 -11.000HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  11  1MRKILLCLIAYPIISIVSSCSEEEDCSM--NARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLYTADSTVLVFHYSKDV-----KIKKDTIVIRQKNT.......................................................................................................................... 116
8 -10.900PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  10  1MKKYLKLFLLAVAMINLTSCEIEIDGGSYYNKSLDLADTFYDADGNYCYQELNFYLDRHGEDYIRVEYPNGRYSESVYSFTWNWEDRSQYSLRMVYGPGDVSYLDDVWIRGNVLSGYLDGH..................................................................................................................... 138
9 -10.700PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  12  1MKIELFIYCLLAGTSLLASCNSEDMTDNPVETLSE------GMYPLTFTAMQ---GEVVATPQTRVSDYDDTDGKHKSKWDGGEVIGVKYTLDSDGKPTTSTSTASQTVYGWY-----DNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRVKLNGDVPNL----AKVFFYGYPTCKNEYGTVIP------TYLATRKVGDYYTAMLAPDTK...................... 227
10 -10.300PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  12  1MKILSFIASFFMVSFVITSCLDDDN--NIEYSPDATIHAFLDTAGLGSYKFTIDQLSREIYNEDSLPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLR................................................................................................................................ 111
11 -9.890PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  13  1MKKVLVALTMVMGMGSAVAFAQEPVKLPAMEQNQQTSQD----------KFTKITVKELPQVVKSTLSKDYEGTIVKEAFVAEKENGKVYKII---AIKEDQSTEEITVLLNEKGEPVNEKD.................................................................................................................... 111
12 -9.600PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  9  1MKRIVSMMVIFTLLLGGMTHQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTNFVSLNDG--SPYPGPNGLGGITVQGSASNVQVKQENNGNVYLSMSVQGIFISATVNLVLYSGTNNAMVTVDPN............................................................................. 171
13 -9.190HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  9  1MKTLKITFVMLMTALFLVLPSCSKDDVNVTLTPSEEVVNAFQQKNVKWEILVGAYEAEFIYSGTYSENGQHIVLDKVEAQAYITQGGKWVRSEFDVTKDYQDSSRAVRETIAAKGKKVDDV---------------------KLFDWSDRNDYFYVEFDEPDSELLINFDGTLY................................................................ 163
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.