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Query: HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAVQRNTSGARTARGAGTGANGPSGGPSQNNRSGKPRKRRISKKQQAIYRRRRIVAGTVLLLIIALIVFCVYSLGRGIGAVNSMIHHDEVYAISRDATPAPKKVSNVKDCSASDVTLQLSAASQSVPVGGSLDFTATIVHEGSGNYLVDGSDSGRVLTITSGQETIYKSDVCPADSRLLLMAKGDKDVQKVTWNTNANATLAKCTDESGWAKVNAGTYVAQLSLKDHPKVKSDPVTFTVQLast
1 -86.800HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali  100  1MAVQRNTSGARTARGAGTGANGPSGGPSQNNRSGKPRKRRISKKQQAIYRRRRIVAGTVLLLIIALIVFCVYSLGRGIGAVNSMIHHDEVYAISRDATPAPKKVSNVKDCSASDVTLQLSAASQSVPVGGSLDFTATIVHEGSGNYLVDGSDSGRVLTITSGQETIYKSDVCPADSRLLLMAKGDKDVQKVTWNTNANATLAKCTDESGWAKVNAGTYVAQLSLKDHPKVKSDPVTFTVQ 240
2 -9.730HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  10  61.....................................................................................................................SVNIDSETGAPQAYATFNVKVTNTGKVP-----GKTSVQIYGQAPYTE--VAIQLLNFEKSSELAPGASEIVSVKVDLQYIASYDMEHDNGDGTTLDPGTYYFAAGNGAHDALNNILVLQG.. 183
3 -7.870PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  8  31............................................................................................................SCDDDPFTVETMPVPNKVTKGQTVEIRCELKKTGD----FANTLYTIRYFQFEGEGTL-DNGITFLPNDRYLLENE---KFRLYYTAQGD-----------------EAHNFIVVVEDNFGNSYEEFDFNNR 147
4 -6.450PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;  ali follow..  15  65..............................................................................................................SYKILHVNFMLVSSDPSVTGYKSVMMRLIDPHGV--DIYDPAAGGGLFNLNGKETPYTFKV-----------DGQPLKIDFLYNHPKH--------------FRHGLHIIELYVDGLKIGEEH---FVI. 167
5 -5.930PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  16  20...........................................................................................................TSCLDDDNNIEYSPDATIHAGLGSYKFTIEIYNEDSLPVHADTIIDKILIKTKSGNDSVININDSIDLREPLTIK--QHDPDSLRWNHVGKMQD-EIIGEQKTIEFNNKILTYSVVEGKNLKVYQNS...... 191
6 -4.880HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  4  23............................................................................................................SCSEEED-----------SMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTIVIRQKNTPYSMDCGYQMKQSITGRSYSRHLLSIYIQTAEVSIYGTENLKL. 162
7 -4.520PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  12  15..................................................................................................................MLTSCSMFEIDNYEEPSETIWGEVVDETGKRVLTDQGSEGIRVRLTELS---------DNVQHNPDFYCMMDGTFQNT-------------------KIFKGEYNVRIDGPFIPLLHDGSVNTEIS 124
8 -4.240PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  7  12.....................................................................................................................................FLLAVAMINLTSCEIEYDDDNIGGSYYNKSLDLWYDADGNYCYQELNFYLDSESVYSFTWNWEDRSQYSLRMVYGPGDV----SYLDDVWIRGSGYLDGHDNYVDFT 145
9 -4.120PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  10  71..............................................................................................................HGRSASLKITIDENLFPNNGRLAIRIQ-TRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYS 207
10 -3.660PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  17  19............................................................................................................SCEHKELTLRVDFDWKNAPQADPEGMCVYFEEGESPIRFDFAGKDGGSVEIKEGRYRIYNND...................................................................... 92
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;