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Query: HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LVGVFCVEGFSVDVFIVHIREICFPVLFFCHFSVSDTFANKAASGGNVVSENTIAVHEQTDAYIAMPQLPYLPDAELAGMGGQLHSLTYSRIQRISTTEYIFSLKDWIDKLAQRAAVLSLHREKLYDATAYYRCQPVCEYYIFTLRRILILast
1 -103.000HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali  100  1LVGVFCVEGFSVDVFIVHIREICFPVLFFCHFSVSDTFANKAASGGNVVSENTIAVHEQTDAYIAMPQLPYLPDAELAGMGGQLHSLTYSRIQRISTTEYIFSLKDWIDKLAQRAAVLSLHREKLYDATAYYRCQPVCEYYIFTLRRILI 150
2 -3.710PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  11  1..................MRKLGFTLVAALAFSVSAFANNANDTINVAGKWDGTINKAKLTKYLQLSSQQNEQVASI----CDYFQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTLTEKQYSDYLR...................... 106
3 -3.550PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  9  65FLAMYEKNGQPLEVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQ.......................................................................... 140
4 -3.170HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  11  50....LCNLGGTIESLAPEFKDL-MTELMEYIFSLPEVQRAVRHMAITHINQASRGKEQKADGNIPLHRHPDQTQ............................................................................ 122
5 -3.010PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  9  1................MKTKFIYVVLMALFLGSQMTLSAQNEENKERKQRPTPEQMMQMQTNQMV-------RALMLDDATAAKFTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLK-YYNEFSKIL. 140
6 -2.840PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  7  1..................MKRIVSMMVIFTLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTNFVSLNDGQAMVQ............................. 103
7 -2.740PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  9  1................MKIKFLSFIASFFMVSFVITSCLDDDNNIEYSPDATIHAFALDTAGLGSYKFTIDQLSREIYNEDSLPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLRE...................... 112
8 -2.740HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  13  168LLALWLI-SFILCGVYIHQSGMLY.............................................................................................................................. 190
9 -2.620PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  8  1..................MKKVLVALTMVMGMGSAVAFAQEPVKLPAMEQNQQTSQDKFTK--ITVKELPQVVKSTLSKDYEGTIVKEAFVAEKENGKVYKIIVTAIKEDQSTEEITVLLNEK........................... 103
10 -2.530PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  7  10..GRFCY--FACPIIFASFSGCIFGSVLPAWSQEIVAGELERCFLAMPESVLPIVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVIC---VVTTVLHPVADSRIDFYTTEWKPL.. 174
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.