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Query: PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRVPRRSWPPRRFPPVLLSGAVTLKRMPQPVTALLAAMITPAVLISGAGTLIMSTSTRVGRATDRVRGLTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRALQAFYTSVALLVLTSILLGLDGLFDVNTGSLPLLVALGGSVSLAYGALLLSYEARYSAATTKEEMRFLEELGQHYAELYADELLast
1 -92.800PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali  100  1MRVPRRSWPPRRFPPVLLSGAVTLKRMPQPVTALLAAMITPAVLISGAGTLIMSTSTRVGRATDRVRGLTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRALQAFYTSVALLVLTSILLGLDGLFDVNTGSLPLLVALGGSVSLAYGALLLSYEARYSAATTKEEMRFLEELGQHYAELYADEL 194
2 -5.470HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  10  1.................................TFVWIIVPMARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLADVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALLMGGAGFIMAIMGCIGTILFIFSLIYAICSQLFKIRPLPTQARWI............... 167
3 -4.680HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  13  1.........................................MIYLHARGLVLLLICNRELLLIGKRKDEDDMAKSTKTYEERIRALEKKEQESIEATKKLIAQRKELEKR.................................................................................... 71
4 -4.350PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  2.........................................................................................ATQAIDATIFASSHPDIAKRTSISGLLISCVMLLIGILSFASTFELEDKSSTVSMALMVFGTGLFLLGIFRLF................................ 74
5 -4.320PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  11  1...........................MQWVLTFVEMYGTYFILGSFLLNLLLVLNTTTSNLKDKYKRLGKNIESVLMQHIEKVEEAQVEVEKVHKRLDIINNRMSFCIQKVGMVRYNAFADMGSDLSYSYALLDENNNGMIITGIYGRSETVTYAKPVK--SNYSLS-QALQRAKENTIDTLELQGFRSKKEL 181
6 -3.790PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  15  253......................NLEDRFQPSDSLMTETLARVYVKQAYRILSLKYPEKSGFFADQIRAIEKLQEN....................................................................................................................... 313
7 -3.780PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]  ali follow..  203................AIRYENLIKYDLKAMYQDIIDKMVALEIATKLGYFSLDDIAEKKEILRQITELTKQNNSLKKEHKKAINF--SDKANLNMQIQVNRKSIEDLENKL.................................................................................. 296
8 -3.340PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  13  2..................................IVYAIGGLLMAVGTGLYAFFIIQDVACIVMLIGAICFATMQMRQQYLGT---------------NLTIRRLRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVNIFYVVILLIATALEVYTLHRIDYLIEKE................... 130
9 -3.130PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  2..................................MLSYVTPGFY-YVGKWMFQVMGLEYDKALKLAEELPEQF--FPETATWGLCWHEIKWGLPVQENLSYQERRQAIYEKRDYHSPMTPYIMERYLENATG.............................................................. 99
10 -3.070HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  194...............................SYVVKEYVTPDQLAVRVRSIERQEAARAHKEAKRQPPIAEQLKAAQREAQGHRGPELPKRS...................................................................................................... 254

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 8 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.