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Query: PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPKKTDIAIAGPSFEDLKQTNAHGAEYWSARELQPLLGYSQWRRFEQAIERAITSCKESGNSPEHHFAGAGKPITGGKGAVQVVDDYHLSRFACYLIAQNGDPRKPEIAQAQKYFAIQTRRQELSDQAAADLERLELRKQTAEEFKALSGAAQQAGVQSKMFGVFHDAGYKGLYGGLGRDAIKQRKAIPDKDNLLDRMNATELAANQFRMTQTRDKLARDGVRSQAQAIQTHEQVGREVRAAIQRIGGTLPEDIPAAEHIKEVEKRLKSATPRLTLDERDAGGLTGGKPDKNETLast
1 -127.000PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;  ali  100  1MPKKTDIAIAGPSFEDLKQTNAHGAEYWSARELQPLLGYSQWRRFEQAIERAITSCKESGNSPEHHFAGAGKPITGGKGAVQVVDDYHLSRFACYLIAQNGDPRKPEIAQAQKYFAIQTRRQELSDQAAADLERLELRKQTAEEFKALSGAAQQAGVQSKMFGVFHDAGYKGLYGGLGRDAIKQRKAIPDKDNLLDRMNATELAANQFRMTQTRDKLARDGVRSQAQAIQTHEQVGREVRAAIQRIGGTLPEDIPAAEHIKEVEKRLKSATPRLTLDERDAGGLTGGKPDKNET 294
2 -3.350HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  14  112.........................................WGNAYTQIAKYNTFLEN-----------ITDCPMEESKKEQWSAEVKCLRAYFFLAFYYTD--LKTLSVDEANSISQTPQTEVYSQVEKDLKTAID............................................................................................................................................................. 200
3 -2.830HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  11  1........................................................................................................................................................................................................................................................MTPYKV--SHQLKKLNNSSSLTKKNMTMEENTVHPARK........ 36
4 -2.780PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  10  1..........................FYIDKHFKRYIKDPAGEHGESMLKVGRELLNEGGNEILAEFI-IEEMKEMAAKMGDKAIHLITPERQATWKQASTHPDENDLKNARKAF................................................................................................................................................................................... 118
5 -2.670PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  13  137............TPDDLDNAKDEEKSLRAALTLHTIRETDLFEIFSSQVENKNVIDS-----MGKYLDGNGNPLSVRKTKSVVPVSDGWKQY.......................................................................................................................................................................................................... 223
6 -2.620PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  10........LDRPPYQVLASSAITYEEMLRLHAIEGLLKYGNSHLADHAFAYLAATAFDG--SYFAIYEALAAWWEARGLLRRGHSQRDLFNHLASFAIHLARGIATRVTVPPLPGYHDSIL............................................................................................................................................................................. 121
7 -2.530HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  11  2......................EDGDFVKLSNLT--IGYTLPIRNNKYMKSLRVYVSGNNLFCITGYSGLDPELDISNVQAPGVETYPTTR--SFTFGVN.................................................................................................................................................................................................. 78
8 -2.360PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  16  85................GEVYISTGSLYLCTTAFLPLGSDDFWSQPDATSARV.................................................................................................................................................................................................................................................. 125
9 -2.240PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  34..............DMSKYSPTEFLVG--CRYYKGYMSPNNAERADRGYSSAWLHHKGRNKHHLEYWIDYAVSKPGDDKTHTKMEGMKMPI---YVCEMFID-----VSASKNYQKEKYTDKSALEYYEKSVDHYMIHPDTKAMLEYLLVMLSVKGEEY....................................................................................................................................... 170
10 -2.020HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  10  3MTDNNDDVLVKKFFSENRDVPDDGSRLWTA--LLIFFRNKGFSVLVSCFDGIFSDVLARHEQLN...................................................................................................................................................................................................................................... 87

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.