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Query: PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete), from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RMRYAMRLSVVDPATARSEFSAAAEGLNVITTQDEIFAVPENNGWDNLTGVFTRSFDDQVLSSTVANLLTNLGGVKVADMYPRLASNVKPANYLGIRYNRHYVANTDNPTKQYWMDGIPENLDPRALKIFCLPDDAEAENYIDKYLDKSAKDFALLAVDESGKPIPSAEKQDRIAIDATKCWNGYPAGTRATWSSTVSYNELVSNGYGPGCTLPMLGSDYCSGKARIYFAPWESYFLLAEAAEYGWISNITPKEAYELGIRSSFEYFGVSEYADQYINSTTRNRLGTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHLTKIITQKYIAQMPYQVLEIWNDHRRLGLPFFEIPANESDLIGSDMVNVLKKDSWKNGQQWDFYPQRMRYPTTLDNADPENYQKAVELLGGSDVIITPLWLast
1 -123.000PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali  100  1RMRYAMRLSVVDPATARSEFSAAAEGLNVITTQDEIFAVPENNGWDNLTGVFTRSFDDQVLSSTVANLLTNLGGVKVADMYPRLASNVKPANYLGIRYNRHYVANTDNPTKQYWMDGIPENLDPRALKIFCLPDDAEAENYIDKYLDKSAKDFALLAVDESGKPIPSAEKQDRIAIDATKCWNGYPAGTRATWSSTVSYNELVSNGYGPGCTLPMLGSDYCSGKARIYFAPWESYFLLAEAAEYGWISNITPKEAYELGIRSSFEYFGVSEYADQYINSTTRNRLGTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHLTKIITQKYIAQMPYQVLEIWNDHRRLGLPFFEIPANESDLIGSDMVNVLKKDSWKNGQQWDFYPQRMRYPTTLDNADPENYQKAVELLGGSDVIITPLW 436
2 -9.720PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  6  155.ISELEGKPRQVNRLAATRIMRVLTFQRLTDVYGDVPYFDATPHYTRQDSIYMDLHDELRAAVDQFDASQPTFGGADLFFNGSIEQWKRFANSL...................................................................................................................................................................................................................................................................................................................................................... 256
3 -5.040PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali follow..  9  178...................................................................................................................................................................................................................................IASFLKENSSV-------W-------GHYHSGVCLIFE---TNNEGEIPFLNVYTGLKLKEVNYNGNFEEINPQPLVESFYIDENKNKSILFDKVLNNQEEWRKLFWDKYEKNKLTKW-------TYEK--EYREDRKLKYDFNCLKGVIFGIKTPQNKKDEIIEIIINKCHENNILDFEFYQAFYCKESKNIQHKKLD.......... 379
4 -3.820PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  6  11........................................................................................................................................................................................................................................YVIRIICE--------GEKTEPLFFTSLCDKLLDENGG--EEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEA----WAVFFSSRSFEYYHPFHATECGERIDGKKVNYNCMTEKSKENACHGEKCINGYARLKKYWNETKTSQST-EKRLKAGIIN............ 227
5 -3.750HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  14  131..DCPMEESKKEQWSAEVKCLRAYFFLNLAFYYTDVPMPANSISQTPQTEVYSQVEKDLKTAIDLL.................................................................................................................................................................................................................................................................................................................................................................................. 202
6 -3.730PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  10  31....................................................................................................................................................................................................................................LLHDMSKYSPTEKGYMSPNNAERADRGYSSAWLHHKEYWIDYAVSKPGDDKTHTKMEGMKMPIRYVCEMFIDRVSASKNYQKEKYTDKSALEYYEKSVYMIHPDTKAMLEYL-----LVMLSVKGEEYTYSYIKKEVP...................................................................... 185
7 -3.580PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  10  2.......................................................................................................................................................................................................................................TDSLFWAIDIKNQNWMGMSQINQTTSGNFYSHRNITQVLENFTDALDCLTAHLMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQQSLLLLCYDHVRLEHHLSLHKAGYKD------------DADCEGMLLELRSRIGGNNSFPHEI-YPAKDV--------AAFMGLVRLPFTCQRLW 201
8 -3.420PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  13  2.......................................................................................................................................................................................................................................SNILILIIGVLVLGLVA-----ALTE--IRHSHKRRAAEAKGESLPEEPVRVVPPGCCGMHITCEKDSLLTAVSK--SIVYYDDEELDRYAGVLPEEYNTEAVEEFEEI-----LSTLQEEEVPSWIQMRQIQMPI..................................................................... 126
9 -3.040PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;  ali follow..  7  1...................................................................................................................................................................................................................................................................MKTTVLFRMMVLVAMVVAGIANTELKAQDNNFITNEEKVDDLVVSKVIYRLD-------GSLYRHMKYDFTYDDQKRVTAKEAFKW-----DSSTEKWIPYFKIDY---------AYSSNEITLVYARWNNSHRAYDDSVEKSVYELNDANMPIAYMNYK-AMNIQTPVTDEADLLL 169
10 -2.870PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  16  1....................................................................................................................................................................................................................................MKYVKILFAMA-MCSAFSLKKGHSKTVYAFGIAASFT--------------------DTVVYFTDIQILDSAKVSKEGFLTHRDLYSYQLKNYVEDNGLQQNST-SENRKKL-EKEATKI........................................................................................ 106
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]