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Query: PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIRRSSEEVLQFSDMKSDSPDLKTAMLGRIRADEPRKVWTPSDFVDLASRDAVDKTLQRLTKAEALRRIDRGLYDQPGFNKLTQKPNPPDPRSVIDAVGRRDQTRMLVDGMTAANDLGLTDAVPAKIVVHTDARRRAIKLGNATITFRPTAASKLFWAGRPAMRVVQALHWLRDLLVRDGESEQIQRKLAKLFEDPAVGPPLKADLAAGMTALPTWMLVFLKPLIETDPDDRGQHPDNVHAAADQDRQRHDKAGDDDHHKTIRAQSNPKPHSSLKARTAKRATTKAAKLast
1 -112.000PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali  100  1MIRRSSEEVLQFSDMKSDSPDLKTAMLGRIRADEPRKVWTPSDFVDLASRDAVDKTLQRLTKAEALRRIDRGLYDQPGFNKLTQKPNPPDPRSVIDAVGRRDQTRMLVDGMTAANDLGLTDAVPAKIVVHTDARRRAIKLGNATITFRPTAASKLFWAGRPAMRVVQALHWLRDLLVRDGESEQIQRKLAKLFEDPAVGPPLKADLAAGMTALPTWMLVFLKPLIETDPDDRGQHPDNVHAAADQDRQRHDKAGDDDHHKTIRAQSNPKPHSSLKARTAKRATTKAAK 288
2 -13.200HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  10  1...................MKEHKEVSALLQQAKQ---------CCYGTSDAQRRALKRRLHAGELVSPYKNLYADRTL----NTMTREQQSLQVIRALSAIHPQWVFAGLSAACVYGLHNYSLHDGTVHIASKSGIGGGDEARLNRIYINRIPTRKHN-------GILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVS-VTKLLKYANPLSENGGESLMRGQ............................................. 208
3 -6.660PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  16  447............TEISHRPNADRDYLFQKLGDE-----FTRTQLLEEAKENTALTWLKRLTKHGKLISMGKGL....................................................................................................................................................................................................................... 508
4 -4.400PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  10  74...........VEKVHKRLDIINNRMSFCIQKVG---MVRYNAFADMGSDLSYSYALLDENNNGMIIRSETVTYAKPVKDGKSNYSLSVEELQALQRAKENTIDTLELQGFRSKKEL........................................................................................................................................................................... 181
5 -3.080HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  10  1MKK-CDHNETYADQRDRELDSINAFLRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVINDGCGDYIAKGKTQNVL................................................................................................................................................................................................. 110
6 -2.590HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  7  1LQTNYKRQRMNIFDIAKQNQEKAWQVIKNTNSLRTGLLMKHRDISSPLNLTDSFQAMARLAENPSIKRIEACIEWHAWYQNEENELWQMDMIHIREGSRYDGYFEKVAQRISEI----MTDEIRETILRLKYETPETEKIIGVEY............................................................................................................................................... 171
7 -2.540PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  6  27..........LIEFIGRKTKNRRSIIVQKLGKKELIRQLDIAEANHCLSFEQVSDEIIE-IQEGDFHTVESCKYNVPSVQAIG............................................................................................................................................................................................................. 101
8 -2.510HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  7  32..............GVIKTNQRDEASPKEVCSGIPQFIIGVKGLAGFLGTSV--STVNRWKACGLLLQCGKVVIFELP.................................................................................................................................................................................................................. 97
9 -2.350PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]  ali follow..  10  12.................NTIFVAKGLLVEMFEKRKVLSFRYSDALALLKEDE--NRLKILIEKEIIHQNGNFVELDARFLDFFELLLEANEEINTATVEEHELMDYYLKEKIQSRKESYVRNIKITFQKLARVTIRNIINLQHNIDNAQIKIAKLQNLDKKRINIQRLIDSTEHRQATDEELTRILLELRQELQLSAHSLIRQQDIINYLNQIKNQVIRKVKYLQDQFELRARSNLSEIMERERSL.......................................... 266
10 -2.220PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  15  152.......SGSSFEDIDMAVHTIWKESPSDEEMRHAGKV-----MTELDGTELFTRITERLTDEAMSERLAK......................................................................................................................................................................................................................... 210
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]