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Query: PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YIQTSFYQEKINEIISPLSRSAFAYYRFTYEGTFFDQDVLVNKIKVTPRSRGERVFEGYIYIIEDLWAIHSLNLKTSLLGFQIQATQQYAPVAENVWMPLTHTYRXXXXXXXXXXXXXYLASTRDYEVTMNPDLAYVPEIIDEKVQEVPDEVAEFDKSESALEQLAKEQPTTRKEYRKMINEYEKEAMKEREEPEVIRESYYSIDSLAKKRELSYWDSIRPVPLTEKEIEGYNRDDSLAVVEAAKVSEVDSVAKKARSKFRPLDFMNGATYNFGAGKSFGFKQNWTKISFNTVEGFKLGMGLFYRKYQEEKLADSVNRIRKSFNIEPELRYGFSSNKFYGKVDFRWSTTKPISGHTFGIEGGKYIYQFNGGDPINEQVNAFYSLLFRQNYMKLYEQEFAKIYWAHRVNYGFTYRGNLTYANRHQLFNNINYSWYNKEGREYTPNQPENVETDDQAFADHDILKLNASIEWRPGVKYGIRNGRKYPITSNSPLIKLSYNKAFGGISNSESSADFDQIEVGIEHYFEFGVSGKFDFNVSAGTFLSNKNVYFQDYQHFGGNRTIFSNFGPASNYRFMDYYKYSTNTSYVSGIFHYQFRKFLLTQLPMLRFSGVRENLFFNYLKTENSKNYWEVGYSLDNLFRIFRLLast
1 -207.000PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali  102  1YIQTSFYQEKINEIISPLSRSAFAYYRFTYEGTFFDQDVLVNKIKVTPRSRGERVFEGYIYIIEDLWAIHSLNLKTSLLGFQIQATQQYAPVAENVWMPLTHTYRXXXXXXXXXXXXXYLASTRDYEVTMNPDLAYVPEIIDEKVQEVPDEVAEFDKSESALEQLAKEQPTTRKEYRKMINEYEKEAMKEREEPEVIRESYYSIDSLAKKRELSYWDSIRPVPLTEKEIEGYNRDDSLAVVEAAKVSEVDSVAKKARSKFRPLDFMNGATYNFGAGKSFGFKQNWTKISFNTVEGFKLGMGLFYRKYQEEKLADSVNRIRKSFNIEPELRYGFSSNKFYGKVDFRWSTTKPISGHTFGIEGGKYIYQFNGGDPINEQVNAFYSLLFRQNYMKLYEQEFAKIYWAHRVNYGFTYRGNLTYANRHQLFNNINYSWYNKEGREYTPNQPENVETDDQAFADHDILKLNASIEWRPGVKYGIRNGRKYPITSNSPLIKLSYNKAFGGISNSESSADFDQIEVGIEHYFEFGVSGKFDFNVSAGTFLSNKNVYFQDYQHFGGNRTIFSNFGPASNYRFMDYYKYSTNTSYVSGIFHYQFRKFLLTQLPMLRFSGVRENLFFNYLKTENSKNYWEVGYSLDNLFRIFRL 643
2 -4.320PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  13  61......YEGTIVKEAFVAEKENGKVYKIIVTAIKEDQSTEEITVLLNE--------KGEPVNEKD.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 111
3 -3.750PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  6  15....................................................................................................................................................................................................................................................................................................................................................................TALPSFGGNGNGNGTDSLQATRYVTRATMYGVGYTNVFDTYLSPQEYK-----GIEFRISRETMRMTTLGDGNV---------SVQNFFQANLAYTHNRVDNNNTFAGLVNWNYGLHYQFRITDNFKLLAGGMGDFASARAYINLDASGMAIWHTKIKNYPLALRYQVNLPVIG................................................................................................................. 188
4 -3.300HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;  ali follow..  9  3..............................................................................................................................................................................................................................................................................................................................................DSWQKWNAEYEFRYQLMHGLISLRAALGMDYCDSRAADYHHTHCNLYAVVNAQAAYKCMLRTHRPTLYGETLALGEDLHDIALTYFKKRFSLTLAMNNPFMDNYRIGCENWNRRAGNTSYQYVNETSRMLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGILKGNK................................................................................................................................................ 172
5 -3.010PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  15  39FTDTVVYFTDIQILDSAKVSKE-DLYSYQLKNYVEDNGLQQNSTKILSKYKRNRNTT---RIDTDKFHFIKPE.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 132
6 -2.780HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  6  97.SEFDVTKDYQDSSSLVVPRAVRETIAADVKLFDWSDRNDYFYVEFD-EPDSELLIDGTLY...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 163
7 -2.330HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  7  8...........................YVIRRTILFDNQCGFALGENSRDGHRDYFWGH-YMNEPDMAERDLLNRARDYQRRYHVEEVEQAPDKETYLYYSTQRPIDIGTY--NSYFNRPVHMDLYFTRQQVTGEIFQAWGAITYAHPLTEREMQDYELRPSRNNLDIRRQMDAQAQVVGKWEDAHHVPDQKRLTWFYPDFGSYVVKEYVTPDQLAVRVRSIERQEAARAHKEAKRQPPIAEQLKAAQREAQGHRG................................................................................................................................................................................................................................................................................................................................................................................................... 247
8 -2.170PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  10  1................PVCGAKVSLEILNYAEELYTDEKGCVSITI----------LGDIHIKDGFFAEAMGHVR------------------------TQEEITLILN---LLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRL--ALLKTLKVKDYKDVTASVLE--DHLKVRESSYK............................................................................................................................................................................................................................................................................................................................................................................................................. 200
9 -2.120HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  15  75.......QKRVHGLSLPLRYTASTVLVFHYSKDVKIKKDTI-VIRQKNTPYFLSMDCGYQMRSYSRHLLDSIYIQTAE..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 151
10 -2.110PB019827 gi|67919427|ref|ZP_00513005.1| conserved hypothetical protein [Chlorobium limicola DSM 245]gi|67782966|gb|EAM42367.1| conserved hypothetical protein [Chlorobium limicola DSM 245]  ali follow..  8  26.................................................................................................................................................................................................................................................................................................................................................................................................YAEGYYSPFAGAFAERGDGGSNERGVYLGIDAALSSKVSVG--AYYDWFRFPKLDSKDYP-----------YPSSGYDTRFFLDWKQSRAVTWTLQLQHKEKEVALKQCPDGAGSCDEEEELYAPLGKVTDRVRLDCDIDALRKLTLRTRGEVKRVVKEYL------ESCYGWLVYQQAGYKAGKFGLKGRFTIFNTDDYDASIYVYEDDLPLVFNSTGFNGRGKAFFILGTWDVTKNLKLAGKYGDSTDQR...... 272
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;