current user: public
If you have questions about the server, please let us know.

Query: PB001565 Q6LS01_PHOPR/1-384 PB001565; Pfam-B_1565;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380
# Score Template Links and tools%idFirst MAKEHLLKKRWNKPVVNMVVLTKQFVLSTLVTNKRCHTTTYASHAITLNFEDTIMALFESYDRRIDQITPVLEQYGFASFEEALEYCKERNVNPYDIVKETQPIAFENASWAYVLGAAIALKEDAKNAAEAAEYIGQGLQAFCIPGSVADQRQVGLGHGRLAARLLNNDTQCFCFLAGHESYAAAEGAIKIAMNANKVRHHPLRVILNGLGKDAAYMIARINGFNYVQTQFNYETGELDVVSERRFSTSQRGDINCYGADDVREGVAIMHREEVDISITGNSTNPTRFQHPVAGTYKKERLEANQAYFSVASGGGTGRTLHPDNVAAGPASYGMTDTMGRMHSDAQFAGSSSVPAHVEMMGLIGMGNNPMVGATVAVAVAIEQALast
1 -151.000PB001565 Q6LS01_PHOPR/1-384 PB001565; Pfam-B_1565;  ali  100  1MAKEHLLKKRWNKPVVNMVVLTKQFVLSTLVTNKRCHTTTYASHAITLNFEDTIMALFESYDRRIDQITPVLEQYGFASFEEALEYCKERNVNPYDIVKETQPIAFENASWAYVLGAAIALKEDAKNAAEAAEYIGQGLQAFCIPGSVADQRQVGLGHGRLAARLLNNDTQCFCFLAGHESYAAAEGAIKIAMNANKVRHHPLRVILNGLGKDAAYMIARINGFNYVQTQFNYETGELDVVSERRFSTSQRGDINCYGADDVREGVAIMHREEVDISITGNSTNPTRFQHPVAGTYKKERLEANQAYFSVASGGGTGRTLHPDNVAAGPASYGMTDTMGRMHSDAQFAGSSSVPAHVEMMGLIGMGNNPMVGATVAVAVAIEQA 384
2 -1.990HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;  ali follow..  14  2........STWSG-------LENDYLCPALRGHIQYFATSYGRAAIRMDGVEVLRSNYYTYFENVWTKFHHLRSTTLKDCDSAKEAIDRSHAYALEQ--TFDQKAFYEAFGIFD---NQSIEKSLVSKNPLVRIL-----------ALLDRR---LGKRRLLALEESMEQELDWVRAFYVIRMQAEGLM................................................................................................................................................................................................... 168
3 -1.580HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  13  1............................................................................................................................................................................................................................................................................MNDLIVDVKLWGESVGSLYWEK-ALFDYERKFIRSGLDISPIIMPISQYRNTPYRFLENRTDCFKLPDTFGNQIINEWFASKGLSGEEITPLDRLCYVGKRGMGA........... 117
4 -1.250PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  10  1MLRRSVPKSIWRTP--RFTVWRRSWAATS------------PSGNLPKSGETRKQPTIKNFINEKRKMRMNLPKVKMLQV................................................................................................................................................................................................................................................................................................................ 76
5 -1.080PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  14  2............KTVFNIVLVLCAAALIYIC---------YSSIMGPINFEKAKKEREQAVIARLIDIRKAQQEY-TEHFDTLIDFVKNQKLPFVMKVGQLTDDQLESGLTEKKAMAIINKAKKTGKYDEVKKNGLENFKRDTMWVAVMDTIYPKGFNADSMKYIPYGNGAIFEMNVKN---DTAKSGAPVYL------KAPYETYLGGLDRQ........................................................................................................................................................................... 194
6 -1.020PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  11  75..................................................................................................................................................................GRLLRPQAQVMEEAIRHWATVAARGKLGPEACEMERQRFDGVIAMMERNDGPTLVVTDSQAIDVVRPLVPITTFSIAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISEACDI---GMVQIPNKLEAALGGKKLQIEHAFGREF--------------PELESGGMDGLKLAIHCGKMQQRMKDLHEAGVPSWAAWPDALRRALEPW.............. 308
7 -1.020PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  15  4FASHFLFLPAYGYLKQYAVETEEGSVVRIFPLTEEIENVEWLPGAIVLLTQDELKEL....................................................................................................................................................................................................................................................................................................................................... 60
8 -0.949PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  14  66...........................................................................................................................................................................................................VFKYTHGRSASLKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQ-KYLKTSGPMDF-EAQNAFSEDQLEIKISGSSLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARY......................................................... 206
9 -0.831PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  15  186......................................................................................................................................................FKEIKFKKINFFSSIFLSFISIFALTI---TFAYNSTFLNLAVRINTIRPNPFNFDLNNLPIENGLLTVEAIWFLQSKMELT-DTATVIIINNTAYVNINKNSVK---------AVNYLKSEENNWYLTGRD-------FPLLGLFVEKFFKDDVEVFSPK-----------------PALY--------------FVVNNSTKNIFSSVGISSLSNNPKLIFTFT........ 375
10 -0.798PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  20  2............KYVKILFAMALVLTMCSAFSLKKGHSKTVYAFGIAASFTDTVV-----YFTDIQILDSA......................................................................................................................................................................................................................................................................................................................... 55
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;