current user: public
If you have questions about the server, please let us know.

Query: PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220
# Score Template Links and tools%idFirst GAITFVEREAAAYDEAAVMANKQARLDAEKSINMVGSGVMHEKSPAHSGCPGSMARSIFRRPAAASGEAVQASSYEQAAVECVQNTTDKTVNQQAGDIYNYERPSQLTQWPVQIKLAPVNAPYFDGAKLLIAADCTAYAYASFHEKFIKGHVTLIGCPKLDSVDYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQVATISIDGRILLast
1 -106.000PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali  100  1GAITFVEREAAAYDEAAVMANKQARLDAEKSINMVGSGVMHEKSPAHSGCPGSMARSIFRRPAAASGEAVQASSYEQAAVECVQNTTDKTVNQQAGDIYNYERPSQLTQWPVQIKLAPVNAPYFDGAKLLIAADCTAYAYASFHEKFIKGHVTLIGCPKLDSVDYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQVATISIDGRIL 223
2 -5.920PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  13  224..................................................................................AQIVRINTIRPNPNPNPNEIFNFDLNNLPIENGLLTVEAIWFLQSKMELTDTATVIAYVNINKNSVKHNNFAVNYLKSEENNWY-PLLGLFVEKFFKDVEVFSPKIP---ALYFVVNNSTKNIFSSVGISSLSTN-NPKLI 371
3 -3.900PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  13  356...............................................................................................................YAFIVPKQASDLLTEGKAL--SHCVG---SNYIKQHIEGKTTIIFVRDKQDLE--KSLYTL----EYKNGQIYQLNCDPTKDVQMAANKWAKLLKSKTKVLQ.......... 451
4 -3.890PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  9  171...................................................DNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGKTQ--GICVF------SGYYKKADTLILSARIGDEIIETVEV-------DLRTLEVVQCDTEYHERIIDLVNKNANLIRERMK............. 321
5 -3.740PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  18  3.............................................................................................................................................NFKEKIQFSKIRSRSCPFMQQNKFRKAIVAIL------MPMILVVSFGNCFGKFAIVKKVYEVNDG................ 62
6 -3.440HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  8  27.................................................................................................................................LDCEKCDAYIATINDNQELRKKTACQGCRVDGIKTVF-GIRQCALEKGVATCGDCL-DLERCPTVGEILENNPSALKN................ 124
7 -3.150PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  10  139..................................................................................TDSQAIDVVHPWTLDRSSGRPLVPITTFSIAMAYQQNGGRL-DGDRVLISEACNHNRITSACNDIGMVQI-----PNKLEAALGGKKLQILESGGMDGLKLAIHCGGCMIDAQKMQQRMKDLHEAGVPVTNYGVFF..... 292
8 -3.010PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  8  40.......................................................................................................TVDLALFTMYLAMDAGLKGSDNDVQVLLVYDKQSGKLEHCLPSDLKGEFSFMAAPSEGGDLYLDLLQIVLNAAEVKKLIVVPFNEEYGKEVENVLRECALENAGHKEEAKDIV....... 168
9 -2.860PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  14  22......................................................................................................................................................LMIALYEKRHPETDASTQYNDLFSYAIKRLERCHFGE-PACKARREAIKAIMRWSGPRMLLRHPILAIR.... 100
10 -2.520PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  9  6......................................................................................................................................CSPWGRFGCY-------LLLFACPSIMKKEFIGRTAKSLALAIFSGCIFGSV---LPAWSQEIVAGELERCFLAMPESVL......... 81
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.