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Query: PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNEGIPEQLIRRLSDASRLVPLALLAVVAAVIYVWRPLFHGLIYRVAYSPSLLILVGTTVVAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDFPTVNEENPRIVPEAVANVQTKGSVSYRQHELGASDIARTEDGRLAWSYPIQPGPFQVRLSGHQRGVLLSDMTAMEDREMQAFDEHEFARGQAMLFHRSADWGLKKSDYWAQYRDDPVEFVHDGEAYMAFPKTGHEWRLTPVPHTVPVWEGVALVHQDGTIEHFDADEAADSEVLDGQRLYPIYNAQREAESLRFRNGIVNQLPIVGTFEGVIEPAGLPSGAGNEQPFTIDLEGEEMAYVMAMEPYGQDTRGLDEVWFFNAETGETVYYETGGDTLLGPERATDIVRAEDTRTDWDTAGSDGEFRAVEPVPVVVDEELWWHSKVVPTDNSDVTRNVFVSAHSGAAVELHDTEAVIDFIEGEDVEDIDEAEEVGEVGTEPLast
1 -166.000PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali  100  1MNEGIPEQLIRRLSDASRLVPLALLAVVAAVIYVWRPLFHGLIYRVAYSPSLLILVGTTVVAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDFPTVNEENPRIVPEAVANVQTKGSVSYRQHELGASDIARTEDGRLAWSYPIQPGPFQVRLSGHQRGVLLSDMTAMEDREMQAFDEHEFARGQAMLFHRSADWGLKKSDYWAQYRDDPVEFVHDGEAYMAFPKTGHEWRLTPVPHTVPVWEGVALVHQDGTIEHFDADEAADSEVLDGQRLYPIYNAQREAESLRFRNGIVNQLPIVGTFEGVIEPAGLPSGAGNEQPFTIDLEGEEMAYVMAMEPYGQDTRGLDEVWFFNAETGETVYYETGGDTLLGPERATDIVRAEDTRTDWDTAGSDGEFRAVEPVPVVVDEELWWHSKVVPTDNSDVTRNVFVSAHSGAAVELHDTEAVIDFIEGEDVEDIDEAEEVGEVGTEP 505
2 -8.150HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  20  25.DDGFSRRVMRRLPDRTRVVIGLLIFFRNKGFSVLVSCFDGIFSDVLARHEQLNNPHLLLPVAMVLILLWGVGFAVRER.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 112
3 -5.160PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]  ali follow..  8  27ANE-----LARRTKVGGIFCFLIVPAALTVYFIAIYVGAANGAEWALNNPTYVHMWFHYAKLYAATAGCIGFMMLKYKWKIGKTNWFKVFPFVIVAINILIAVVSDFESGVRGAMALAEYGDRWWLSSE........................................................................................................................................................................................................................................................................................................................................................................................ 152
4 -5.160HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  12  23.NMTMEENTVHPARKLLLLIAYLLQAVAVVVGFESDLLEVGACVKYQMLMLMEVLTICFIPMALKMFSLSAVRRRLKADRVRGLVLFGSCRLAMIGVPLVANTIL................................................................................................................................................................................................................................................................................................................................................................................................................ 133
5 -4.980PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  11  2SYISVPRDLTKVKSKVKRQLICFGMAVLIGVPSFF------LMKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQPLEV-----------ILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRK....................................................................................................................................................................................................................................................................................................................................................... 151
6 -4.650PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  7  3................IKFLSFIASFFMVSF----------VITSCLDDDNNIEYSPDATIHAFALAGLGSYKFTIDQLSREIYNEDSLPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLREPLTIKVWSTEALAGISPNQTKEYTIKVNVHQHDPDSLRWVGKMQDEIIGEQKTIEFNNKILTYSVVEGKNLKVYQNSNYSNWTAGDLTSTLPNSILPLNGIILATANNKVYESTDGVAWTISDKFSGNVKTFISKIPVDTDTKITYITEDGKQYIYSILESELGAADSEKKIEEADKEFPVDNISYTTFSKGSSYYRNIIVGKHEPAIEIDINNKKVPITIAWGYDGNVWAKLGTKSTTAYCPAFDNFYVFGNEFESIYVSQNEGIAWQKANKKFSFPHQDWNESGFTPSIEKPEFRGRK-IVQDTENKFIYVL......................................................... 446
7 -4.070PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  19  26LVERLKGYLDGLPPETCRRIVLGMLAAFAVLLYTFGRAAYDI............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 68
8 -3.580PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  15  54.........IRRLRKIMVLADIGFILAGLFMVFVKQYLANSIGGYTTYVNIFYHNWVVILLIATALEVYTLHRI............................................................................................................................................................................................................................................................................................................................................................................................................................................... 123
9 -3.540PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  14  14INKGAGNPLEFK-SQYLFIFAGGLVAVLLVVVILYIAGVNQWICIPFGLLSGSLLVWLTFRLNARYGEHGLMKLLSGKRHPRYLIHRRRLFRLLT.......................................................................................................................................................................................................................................................................................................................................................................................................................... 110
10 -3.270PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  12  59..NDWPEFLQRIIKAGSSPI-IMLLGALTALGACMSRHVRCLYGGKYHHPSLQCFVVA-----------------PSASGKGILSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMKERTKKEAPQMPPNRMFLISGNNTGTGILQNIMDSYNRRTDQEYREVKKSYLSVLISGTPSQVQTFIPTAEDGSY....................................................................................................................................................................................................................................................................................................................... 275
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.