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Query: PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AGMLDPSKQIPRMSLDLASTPLHERSTITSAFVKEGAVRSSRYGAPLPGCLPRWSLGRNARLLMVIPMDAETPGGRLLRPQAQVMEEAIRHWATVLSVRLDLDAARGKLGPEACEMERQRFDGVIAMMERNDGPTLVVTDSQAIDVVHPWTLDRSSGRPLVPITTFSIAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISEACNHNRITSACNDIGMVQIPNKLEAALGGKKLQIEHAFGREFPELESGGMDGLKLAIHCGGCMIDAQKMQQRMKDLHEAGVPVTNYGVFFSWAAWPDALRRALEPWGVEPPVGTPATPAAAPATAASGLast
1 -112.000PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali  100  1AGMLDPSKQIPRMSLDLASTPLHERSTITSAFVKEGAVRSSRYGAPLPGCLPRWSLGRNARLLMVIPMDAETPGGRLLRPQAQVMEEAIRHWATVLSVRLDLDAARGKLGPEACEMERQRFDGVIAMMERNDGPTLVVTDSQAIDVVHPWTLDRSSGRPLVPITTFSIAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISEACNHNRITSACNDIGMVQIPNKLEAALGGKKLQIEHAFGREFPELESGGMDGLKLAIHCGGCMIDAQKMQQRMKDLHEAGVPVTNYGVFFSWAAWPDALRRALEPWGVEPPVGTPATPAAAPATAASG 330
2 -4.990HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  12  1.......................................................................................................................................................................................................MANYATNIFHARTENKTDLDKIEDFLDDTFSGDSVDAEFSSRWVYPEEE--------------------KKLVESLEDKDKVYIKILTYEFEDEYVSFR................................ 86
3 -4.000HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  13  10................................................................................QFMVGNGILAFAVIFVVVIFVYMSMRLQQQKAENRNFIETYTITLTKGFAGDSTSIFINDSLLVNRTMTEEPAEQSALMIVNNATEKLSLFELSEQGGEYRFEKEGEEVKPTGAGIKKLSKECCQ............................................................................................................................. 142
4 -3.160PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  10  83..........................................................................................................................................VQNTTDKTVNQQAGDIYNYERPSQLTQWPVQIKLAPVNAPY--------------DGAKLLIAADCTAYAYASFHEKFIKGHVPKLDSVDYSEKLTEI----------IRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQVATISI...................................... 218
5 -2.960PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  11  1.................................................................MTLIKGEPGKGIVLKEYKNIQKIVDW-----ILTIEDREQRTRYANTCVELMRQLNPGVRDTEEHTTK--FIMSNFKLDVDTPYPMPDIAVLGRKPERVPYNHNKLKYKHYGNINLLIEQAILKEDGAEKEDAILGRLMKRLYSTWNKENVDDEVIVEHLSE-LSKNNLQID............................................................................................. 173
6 -2.910PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  10  3...............................................................................................................................TQIKLSETVMVIDVAYLNFVINDL-----------RKYFEPLLGRSLQTVDLALFTMYLAMDAGLKGSDN--VQVLLVYDKQSGKLEHC----LPSDLKNELDGVAFK--------------ASLGEFSFMAAPSEGFVSRGDLYLDLLQIVLNAAEVKKLIVVPFNEEYGKEVENVLRECALENAGHKEEAKD......... 166
7 -2.230PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;  ali follow..  7  4.................................................................................................LGKIVFGLGIAVCLFSATNSIAQVKTHSSLRAENLEVILVKDIQHISDTTHHTHAHDPHKSSYKILVNFMLVSSDPSVTGYKSVMMR-------IDPHGVDIYDPAAGGGLFNLNGKET-PYTFKVSTKLDGQPLKIDFLYNHPKHFRH------GLHIIELYVDGLKIGEEHFV.......................................................... 166
8 -2.160HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  11  1........................................................................................................................................................................MLYTAEIKTHQEGKMKETILLFHAPDKDTLLKIEMAL-FPLHVRLRRVAKEDYVQPLGALAGVKDIPRI-------EETYEGDELSDTLFVFAF---FSDNRLNQALAALRKSGAGTFPYKAILTPTNQNWNALQCFSEIRREHETIQKQLKGNKEQA.... 147
9 -2.140HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  15  14.........................................................................................................................................................................................................................................................GYITMKKMIAYCGKCDAYIATINDNQELRKKT................................................. 49
10 -2.120HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  10  5............................................................................IIVPMARTATEKLEMRGQSVTVEGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLADVFVLVI--GFILKFFIILAGIFLLPPLVLVVFILVVVTFALLMGG--------AGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIP--------------------------------IFSLIYAICSQLFKIRPLPTQARWILLALWLISFILCGVYIHQSGML............................. 189
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;