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Query: PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHNFKEKIQFSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNCFGKFAIVKKVYEVNDGFNIGSGLLAKFIKTLVMYFPFSILYFVGFFFDLILFNLIEFWSGNNPVGYNEYDENGKYVKAYEENGEKLLLSYSDFGKRLDIQFAKEGNSQNLIVFRAEPGKFFVEKDGKLEEIVVSSETVGSKTILKMAEQGKLKSTKVVDTKTLNDLEAKLVSESLast
1 -108.000PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali  100  1MHNFKEKIQFSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNCFGKFAIVKKVYEVNDGFNIGSGLLAKFIKTLVMYFPFSILYFVGFFFDLILFNLIEFWSGNNPVGYNEYDENGKYVKAYEENGEKLLLSYSDFGKRLDIQFAKEGNSQNLIVFRAEPGKFFVEKDGKLEEIVVSSETVGSKTILKMAEQGKLKSTKVVDTKTLNDLEAKLVSES 220
2 -5.800HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  17  26VENIGKTVTFEKVSNNVNDFISSDKPRNFFLVLVVFILVVVTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCITILFIGIPIFSLIYAICSQLFKI-NYWNGRNAV.............................................................................................................. 207
3 -5.260PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  7  1.........................MKIERLFIYCLLAGTSLLASCNSELTFTAMQGEVVATPQTRVSDYDDTDGKH--------------------------WDGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNI----------QSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRV........... 171
4 -5.070PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  13  1.........................MKKFLSFIASFFMVSFVITSCIHAFALDTTIDQLSREIYNEDSLHADTIIDKILIKTLTTASGVVTMKDK---DSIDLWNHVGKMQDEI-EFNNKILTYSVVEGKNLKVYQNSNYSNWTAAGTNTTGDLTSIILATANNKVYESTDGVA.............................................. 238
5 -4.720HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  6  1.........................MMRRKNITWVWLLGAAFMVGCIQPDRMENILYDYH--LSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDSSMVWYTRHKKLGERFRSEKKHMQELLALRENKPAVSLPGDTVDV............................................................................. 132
6 -4.630PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  9  1......................MKTLTFKYLKLFLLAVAMINLTSCYDDDNIGGSYYNKSLDLCSRPWADTFYDADGNYCYQELNFYLDRHGEDYIRVSVYSFWNWED................................................................................................................ 103
7 -4.480HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  14  1MRKFNYK-----------------RLIVMLVVVLAITCLMATTAFAAGTGDVAGAVESWSTASTQIKSVVDNVV-AVFFFAKLGTAYQFEWAAPAILFACLVFWS................................................................................................................... 111
8 -4.390HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  14  2...........................KKLLLAMIAVAALISFAACDHNETYADQRDRELDSI-------NAFLRN................................................................................................................................................ 43
9 -4.370PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;  ali follow..  13  1M-NAVNE------KISYTINMDTQKKHNLSGTIILVSCFLLLAGACDNSDRIETETQANGVLLNFNASTID..................................................................................................................................................... 67
10 -4.280HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  13  1MTPYKVSHQLKKLNNSSSL-MEENTVHPARKLLLGQLIAYLLQA------VAVVVGFESDLLEVGACAEDVFVKYQMLMLMEVLTICFIPMALKMFSLSAVR...................................................................................................................... 101
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.