current user: public

If you have questions about the server, please let us know.

Query: PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400
# Score Template Links and tools%idFirst KRFYRIRNLDSLLDKYKELENQEIFFQSTDKLNDPMEGFMDFIFKGDEVVWKNLIIHFIFCFSKVNLIYQVIGEKIKLDNKIIPIFEKIDLQKKQYYFDLLGDSNKNKFYEFINKDSISRSELESFLKDINLSFIGDISFLESKIFENDNLQNLQFLLNFYSHYLEVIEQFTYPKYYIASFLKESYNSSVWGHYGQGHSGVCLIFETNNEGEIPFLNVYTGLKLKEVNYNGNFEEINFFESLGKIPQPLVESFYIDENKNKSILFDKVLNNQEEWRKLFWDKYEKNKLTKTKDWTYEKEYRIVLNRLMDYEIKEEDRKLKYDFNCLKGVIFGIKTPQNKKDEIIEIIINKCHENNILDFEFYQAFYCKESKNIQHKKLDVNIINDLIKKAKQNKLDLNIEFLLast
1 -114.000PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali  100  1KRFYRIRNLDSLLDKYKELENQEIFFQSTDKLNDPMEGFMDFIFKGDEVVWKNLIIHFIFCFSKVNLIYQVIGEKIKLDNKIIPIFEKIDLQKKQYYFDLLGDSNKNKFYEFINKDSISRSELESFLKDINLSFIGDISFLESKIFENDNLQNLQFLLNFYSHYLEVIEQFTYPKYYIASFLKESYNSSVWGHYGQGHSGVCLIFETNNEGEIPFLNVYTGLKLKEVNYNGNFEEINFFESLGKIPQPLVESFYIDENKNKSILFDKVLNNQEEWRKLFWDKYEKNKLTKTKDWTYEKEYRIVLNRLMDYEIKEEDRKLKYDFNCLKGVIFGIKTPQNKKDEIIEIIINKCHENNILDFEFYQAFYCKESKNIQHKKLDVNIINDLIKKAKQNKLDLNIEFL 402
2 -5.050PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  228.................................................................................................................................................................................YFAPWES--YFLLWEAY---ELGIRSSFEVSEYADQYINSTTRNRLGTSVAFDDTVEPTS--------EVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHLTKIITQK---YVLEIDHR-------------RLGLPFFEIPANESDLIGSDMVNVLKKDSWKNGQQWDFYPQRMRYPTTLDNADPENYQKAVELLG....................... 426
3 -4.370HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  13  113.................................................................................................................................................................................................................................................................................................ENELWQMD----MIHIREGSRYDGYFEKVAQ----------ISEIMTDEIRETILRLKYETPETEKIIGVEYYQAVIRDG----------VRDYSGFKEWRKQHPVTGVVEWM 202
4 -3.980PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  12  2.................................................................................................................................................................................................................................TLIKGEPGKGIVLKEYGKNIQKIVDWILTIEDREQRTRYANTCVELMRQLNPGVRDT------HTTKLWDFKLDVDTPYPMPDIAVLGRKPERVPYNHNKLKYKHYGKNIDGAEKEDAIIYLGRLMKKENVDDEVIVEHLSELSKNNLQID.......................... 173
5 -3.210PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  10  56....................................................................................................................................................................................................................................................................................................TWMYVNP-------------------LQLEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVF-----SDSTFTSALKRGSLK..................... 122
6 -3.150PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  9..............................................................................................................................................................................................WGRFG-----YLLLFA-------------------PIIFASKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELERCFLAMPESVLNDLCRRAGHLSGFTHTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFM-RILPFSDSSSVICVVTTVLHPVADSRIDFYTTEWKPLKTDRFWQQPRIEDFFLPHTDRQSYAYQAIYASL 207
7 -2.930PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;  ali follow..  12  1............................................................................................................................................................MGAAVRKQVRGAISFFLVALGICLAVSCTYRKDERILYRQ-QKRDVLDYEILIPDYTRSYSLELLIRHNRYEYRDLALAYEVSVGERLIFADSVDLTLADKPQQ--------------NGKGVAKQQNRFRLPISARFPYSGLYKIELKHN-------------MRVPTLSGITVGIRLTEGRDSP............................................................ 167
8 -2.550PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  24.................................................................................................................................................................EDMTDNPVETLSEGMYPLTFTAMQGEVVAWD--GGEVIGVKIGTDGAVGSYTLDSDKPTTSTSNIPAYWQSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSY--------------KENVQLNLEHQLVKFRVKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTATKTSNNFVKIEVYGLTYYYNPD.......................... 247
9 -2.320PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  11  105................................................................................................................................................................................................................................................................................................SQLTQWPVQ--IKLAPVNAPYFDGAKAYAYASFHEKFIKGHVTLIGCPKLDSVDYSEKLTEIIRRNDIQSVTIVRMELQDSGKFIPWQVATISIDGRIL............... 223
10 -2.220PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  10  70..............................................................................................................................................................................................WKHENQTYDAVCLHVVMWNDLKGRCVKNFS---------GKVIPQITLSLYLEAELDEIIETIDVGSYIGNKQVIPGYCNLEMRKQKITQQWIGG-FLDYAGDERILQKAKKYEKWIENKP---------FERVLYEAIMLGYKNNKKPFLMLASLVTAETIQSFVPE----YTPAQEKKIIAQSLLLGMAGLLPLNEEETKRFDDETIQYF 264

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 9 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Alonso A, Rahmouni S, Williams S, van Stipdonk M, Jaroszewski L, Godzik A, Abraham RT, Schoenberger SP, Mustelin T. Tyrosine phosphorylation of VHR phosphatase by ZAP-70. Nat Immunol. 2003 Jan;4(1):44-8. Epub 2002 Nov 25.