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Query: PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKAFLIVSVACNVWFLFLLFYDRIMDTKLIRFFRHIAGLWRSLDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDFRLast
1 -85.400PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali  100  1MTKAFLIVSVACNVWFLFLLFYDRIMDTKLIRFFRHIAGLWRSLDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDFR 243
2 -77.500PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  75  1MTKVFLIVSVACNVWFLLMLLSDRITETKFVRFLKGAAGLWRSLGTKSEKQDTLHSEASDEDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEFEIR 243
3 -52.900PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  12  1MGTIVYLSIRLACACYILYKVC-----GQKKKIREICDLLYTKLPPVKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEE--------------DVAEEEVECKLPLEEMRMKEEQEELDGTYPAVDAVSRVVTPDDLDNAGNVLFKLNKDEEKSLRAALTLHTIRETDLFEIFSSQVEN---KNVIDSLMGKYLDGNGNPLSVRKTK----SVVPVSDGWK 221
4 -4.540PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  16  2...............................................................TLLGDKTASPYDTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLKLHGEYQGSGFTEPKYIARR---------------GDGQVVQ------------------SRLLHLVASSVDGSTIAHRVSGRFGREVSADNVRYLIEQKLDPLGVTVPEGREEEDISA......... 144
5 -4.110PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  7  34................................................................TIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVLEDHLKVRESSYKYRPVYKDNI........................... 209
6 -3.470HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  9  40....................................................................................................................................................GFGYGLSYTTFTQEIQGQPEISVNIDSEQAYATFNVKVTNTTSVQIYGQAYTEGGLEKVAIQLLNFEKSSELAPGASEIVSVKVDLQYIASYDME 145
7 -3.400PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  6  1MKRNYFFTMLAAVLLAV--------------------------------AGANAQESAEFRPAELAGIWQLC---HYVSEIPDVPGILKPSNTFKVLSDDGRIVNFTMIPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLKYFIAKDLNGNELNTWFHETWKRVGMPA..................................................... 155
8 -3.040PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  11  1MKRLFIYCLLAGTSLLAS----ETLSEGMYPLTFTAMQGEVVATPQTRVSDYDDTDGKHKDGGEVIG--------KIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYGWYPTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHLVKFRVKLNGDVPNLSDAKYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAML............................... 222
9 -2.910PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  12  1MKRIVSMMVIF--TLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVL.......................................................................................................................................................................... 71
10 -2.890HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;  ali follow..  7  3.........................................................................................................KEVNQEERAPRTVADVKEMLTKHSNGEIQRTIQNCITILQNDHVLADAIRLNLLSERIDIVKPKTLNDTDMKYILRRMEKISSEKKIESAIRIVGNENPYHPIRDYLN.............................. 119
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.