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Query: PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PTHARGDRGPARKSAGNNKSGKKTTLFVVLGLIVIVYIVGVVAFSQVAYPNTIIAGVDVSFSNASSAATKVNSAWKHYKLTVTGDDFSWTYQPESNEPIVDGEAAAKEIISHNEAFVWPVRLVESLSGKTKTTATSNEVDLDQDVDLSMLSDTFDQKKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKFTVEKARSNEKLNREHVIKYAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEDAGKVDGSSVLQWISFADPANPTLDTSQISSWAAELANGFNTVGSTRWWTRADGKQCAVEGGDFGWSIDSSSLAKQVEDAINNKQTGEIEIKYSQKLast
1 -104.000PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali  100  1PTHARGDRGPARKSAGNNKSGKKTTLFVVLGLIVIVYIVGVVAFSQVAYPNTIIAGVDVSFSNASSAATKVNSAWKHYKLTVTGDDFSWTYQPESNEPIVDGEAAAKEIISHNEAFVWPVRLVESLSGKTKTTATSNEVDLDQDVDLSMLSDTFDQKKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKFTVEKARSNEKLNREHVIKYAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEDAGKVDGSSVLQWISFADPANPTLDTSQISSWAAELANGFNTVGSTRWWTRADGKQCAVEGGDFGWSIDSSSLAKQVEDAINNKQTGEIEIKYSQK 362
2 -3.970PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  4  2............................................................................................................................................................SNIEQAYRGYGFAGRGQKNGCTVYQLKGEGGSGEMVCYDIAPGIQMSFNQLMDSTFQSIAPVKKFLQID----------------------------CIEGCYEVEYQNGTVSFLGEGDLCVTDLSRQVVTLFLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLL--------VKSREDVERIFGKLSEVDERIQAPYYWIK 186
3 -3.710HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  3  17..............................................................................................................................................................................................LVLPSCSKDDVNVTLTPSEEVVNAFQQ-PDVKNVKWEILVGAYEAEFIYSGTYSENGQHIVLDKVEAQAYITQGG------------KWVRSEFD----VTKDYQDSSSLVVPRAVRETIAAKGKKVDDVKLFDWSDRNDYFYVEFDEPDSELL.................. 155
4 -3.380PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  9  14ETPAENITEPSKDGRKCPKWLLPLVAAVCAVILVVAGIIGWNAYSGA---AEAKEACVTAADTVRNNANEYNALLNGDAADAAAVKAEQVKDSKTV-------ESLGKELKASAP----------EYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEAS-KLLADSDGKVAD............................................................................................................................................................... 197
5 -2.970PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  8  38........................................................................................................................................................NYSEIELGGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITID-------ENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDC-------------KNLTSKVSGSGDITLKGKADEARYS........................... 207
6 -2.850HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  17  3..................................................................................................................................................................................................................................................................................................KKKRGEERMKEEDNILKKVGKKNSFKVPEG----------------ENLTSEVMGKLPEKEGPAFE...... 54
7 -2.530HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  7  44.......................................................GLSYTTFTQEIQGQPEISVNIDSETGAPQAYATFNVKVTNTG-KVPGKTSVQIYGQAPYT--------GGLEKVAIQLLNFEKSSELAPGASEIVSVKVDLQYIASY--------DMEHDNGDGTTGTYVLDPGTYYFAAGNGAHDALNNILVLQGADESKMVGTGSAAAAVAQEITEDLISRTAFSVSKTGEKISNQIPYADWNYYQPGEVTYLTRADWAGTFLMFYQMFGLDFDDPKWDELLDKMTPGVESIGTVETYMTENAGN--------GVAVNLN......................... 357
8 -2.330PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  9  2..................KIKFLSFIASFFMVSFVITSCLDDDNNIEYSPDATIHAFALDTAGLGSYKFTIDQL----------------------REIYNEDS---------------------------------------------LPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLREPLTIKVWSTEALAGISPNQTKEYTIKVNVHQHDPDSLRWNHVGKMQDEIIGEQKTIEFNNKILTYSVVEGKNLKVYQNSNYSNWTAAGTNTTGDLTSTLPNS-ILPLNGIILATANNKVYESTDGVA........................................ 238
9 -2.290PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  9  2................KIERLFIYCLLAGTSLLASCNSEDMTDNPVETLSEGMY--LTFTA-MQGEVVATPQTRVSDYDDTDGKHKSKWD-GGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYG-------NTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRVKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKT----YLATRKVGDYYTAMLAPDTKTSNNFVKIEVYGLTYYYNPDIELVKGTVYTYTVNKVDIPYEIIDNNGNSVSGFENISKDISISGTHIPGLTITGTCTVTMNSAAISANGKPGISVENDNVTLTLIVK.. 334
10 -2.250PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  9  2..................NKRLNLYCTILLCIMSAVILYSFYAVSKDMVSGFTAGVRSADIEAKIRNDKNYANSEEYKKLMQERDESEAWARAATISFKADLNAEPATFVNQKTG....................................................................................................................................................................................................................................................... 98
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.