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Query: PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPKHPTGTKGTAGTARKFPTHTGACNKVGNDNISDDKEGEEELLPGSEPQHQLPTFPENDWPEFLQRIIKAGSSPIQHDIMLLGALTALGACMSRHVRCLYGGKYHHPSLQCFVVAPSASGKGILSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGTGILQNIMDSDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTDQEYREVKKSYLSVLISGTPSQVQTFIPTAEDGSYSRQLYYYMCGISKWISQFMDNEIDWEEIFTAMGLEWKEKLSVIKTHGIHTLQLTDEQKEEIDTVFSDLFERSSVANGREMYSFVARLAVNLCRIMSEVAVLRALESPQPYDFKTSPTSPFTPDKEIPTDNRKDDIITRWDVSISQEDFHAVLSLAEPLYCHATHILSFLPNTEISHRPNADRDYLFQKLGDEFTRTQLLEEAVAMGIKENTALTWLKRLTKHGKLISMDGKGLLast
1 -123.000PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali  100  1MPKHPTGTKGTAGTARKFPTHTGACNKVGNDNISDDKEGEEELLPGSEPQHQLPTFPENDWPEFLQRIIKAGSSPIQHDIMLLGALTALGACMSRHVRCLYGGKYHHPSLQCFVVAPSASGKGILSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGTGILQNIMDSDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTDQEYREVKKSYLSVLISGTPSQVQTFIPTAEDGSYSRQLYYYMCGISKWISQFMDNEIDWEEIFTAMGLEWKEKLSVIKTHGIHTLQLTDEQKEEIDTVFSDLFERSSVANGREMYSFVARLAVNLCRIMSEVAVLRALESPQPYDFKTSPTSPFTPDKEIPTDNRKDDIITRWDVSISQEDFHAVLSLAEPLYCHATHILSFLPNTEISHRPNADRDYLFQKLGDEFTRTQLLEEAVAMGIKENTALTWLKRLTKHGKLISMDGKGL 508
2 -6.660PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  16  13..............................................................................................................................................................................................................................................................................................................................................................................................................................................................SDMKSDSPDLKTAMLGRIRADWTPSDFVDLA-----SRDAVDKTLQRLTKAEALRRI-DRGL 73
3 -3.250PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  12  3..........................................................EGIPEQLIRRLSDASRLV---LALLAVVAAVIYVWRPLFHGLIYRVAYSPSLLILVGTPLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEERSLAQDATA-DAEAVTDFPTVNEENPRIVPEAVANVQTKGSVSY---------------------------------------RQHELGASDIARTEDGRLAWSYPIQPGPFQVRLSGHQRGVL......................................................................................................................................................................................................................................... 194
4 -3.230HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  14  1...........................................................................................................................................................................................................................................................MDMTDNNDDVLVKKFFSEPDDGFSRRVMRRLPDRT.............................................................................................................................................................................................................................. 40
5 -2.910PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  13  28......................................................................................................................................................................................................................................................PQPVTALLAAMITPAVLISGAGTLIMSTSTRV-----------------------GRATDRVRGLTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRALQAFYTSVALLVLTSILLGLDGL.................................................................................................................................... 134
6 -2.730HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  11  9.............................................................................................................LFHVLL---GKRKDEDDMAKST-KTYEERIRALEKKEQESIEATKKLIAQRKELEKRKKAEESKKRTHRLCQIGGAVESVLGC---------IEEEDLPKLIGFLKRQETN--KFFSKAMQKE.................................................................................................................................................................................................................................................................................... 128
7 -2.580HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  14  4..........................................................................................................................................................................SAPPILKTLKTKDMIAKTILQQIGGKRRDFIDMGNGLRMSLARNKTSANRLDIIYDEGADLYNMRFYRRTFSKKTFECKKDIAVHEGIYFDMLEEMFTMV-TGLYTRF...................................................................................................................................................................................................................................... 118
8 -2.390PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  17  24..........................................................KRLVERLKGYLDGLPPETCR-RIVLGMLAAFAVL----------------ALYTFGRAAYDIGRNDGSRME--AGRVELPTPAETDNHLTPYLYGTEE................................................................................................................................................................................................................................................................................................................................................................ 105
9 -2.380PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  10  1.......................................................................................................................................................................................MSILKITEELQNLGNAG---KDNRQRVANIVLENKELFEPLLEVTFQVDEPISVKAAWVLEWICTHHQLSWMIPHLTFFTENLKNLTFDSAIRPCICEHLANAYYSKRDNEFKSKLKNEHIQEIIETGFDWLITPQKIAVRAYTMN-LFGLENDWVHPELKHLIETKIIHESKGTKARGKHILNLI........................................................................................................................................... 187
10 -2.330HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  10  8........................................................................................................................................EQLRAEKEQVETQLAQEQHKLKRLENRKKYLEKGERQKRTHRLCNLGGTIESLAKDLTRTE-EYIFSLPEVQRAVRHMAITHINQASRGKEQKADGNIPLHRHPDQT......................................................................................................................................................................................................................................................................... 121
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.