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current user: public |
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| Query: PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7], from HGM_OVER |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 | |||||||
| # | Score | Template | Links and tools | %id | First | ASYISVPRDLTKVKSKVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQPLEVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKKRP | Last |
| 1 | -88.600 | PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7] | ali | 100 | 1 | ASYISVPRDLTKVKSKVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQPLEVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKKRP | 154 |
| 2 | -19.100 | PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205; | ali follow.. | 11 | 18 | ...MNYMRRQYEIMGRLPRAVTWRALGYFAAVEAGLVAFRFLFGDMIDQVWLMYYGVIPLFLVWGADKYKTDGKSLFSFVRSWITFRLRKHQSSRLVKKHVFYGHVCVQHDVKDLPIVHSFSEEENDIHAYDVTFLPQKEEVEYVEKDEQTTIK | 180 |
| 3 | -6.770 | PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473; | ali follow.. | 9 | 9 | AMEYEINKGAGNLEFK---GLKSQYLFIFAGGLVAVLLVVVILYIAGVNQWICIPFGLLSGSLLVWLTFRLNARYGEHGLMKLLSGK-RHPRYLIHRRRLFRLLTKRRK............................................. | 114 |
| 4 | -6.490 | PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151; | ali follow.. | 17 | 9 | TIFASSHPDIAK--------TSISGLLISCVMLLIGILSFASTFELEDKSSTVSMALMVFGTGLFLL----------------IFRLFWKSKEVVYVPTGSIAKERSIFFDLKHMDKLTDLVNSGSFSADSKIKSEASGNIRMDVILSADNK.. | 138 |
| 5 | -5.270 | PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142; | ali follow.. | 16 | 96 | ........................................................................................MNPKRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKR. | 160 |
| 6 | -5.240 | HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411; | ali follow.. | 6 | 191 | .........................................................................................DFGSYVVKEYVTPDQLAVRVRSIERQEAARAHKEAKRQPPIAEQLKAAQREAQGHRGPELPKRSP | 255 |
| 7 | -5.000 | PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708; | ali follow.. | 11 | 1 | .MNEGIPEQLIRRLSDA-----SRLVPLALLAVVAAVIYVWLIYRVAYSPSLLILVGTTVVAGIALVFWPRMGEDPLEIVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDFPTVNEENPRIVPEAVANVQTKGSVSYRQHELGASD... | 162 |
| 8 | -4.530 | PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876; | ali follow.. | 6 | 57 | ............................................................................DGEIYGQAVHYYDENEIEVGKPIQCQVAVNHVVELTAEEKAEARQNAIRQYQDEEVRRLQNRNKPRTATKATVQEV.. | 132 |
| 9 | -4.170 | HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; | ali follow.. | 14 | 58 | .KTLSIPGWLNDAAES---HINFSSVLQKGLKSELGMI.................................................................................................................... | 92 |
| 10 | -4.000 | HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234; | ali follow.. | 17 | 27 | ...FKVPEGFENLTSEVMGKLPEKELLYMAAMFIGAALIIRVA............................................................................................................... | 85 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9. |