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Query: PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKEKESKSIIVYCFGSYMNYMRRQYEIMGYRLPRAVTWRALGYFAAVEAGLVAFRFLPPFKWIFGDMIDQVWLMYYGVIPLFLVWGADKYKTDGKSLFSFVRSWITFRLRKHQSSRLVNVPKLKKHVFYGHVCVQHDVKDLPIVHSFSEEENDIHAYDVTFLPQKEEVEYVEKDEQTTIKALast
1 -112.000PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali  100  1MKEKESKSIIVYCFGSYMNYMRRQYEIMGYRLPRAVTWRALGYFAAVEAGLVAFRFLPPFKWIFGDMIDQVWLMYYGVIPLFLVWGADKYKTDGKSLFSFVRSWITFRLRKHQSSRLVNVPKLKKHVFYGHVCVQHDVKDLPIVHSFSEEENDIHAYDVTFLPQKEEVEYVEKDEQTTIKA 181
2 -19.100PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  11  4.................ISVPRDLTKVKS-KVMFNLTKRQLICFGMAVLIGVPSFFL------MKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQPLEVILEHMIQAIFQRPKIRPYV-----TDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKKRP. 154
3 -5.830PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;  ali follow..  10  25.....................................................................................FAKNYRNPAKN----IDDCVTYILNYVQKSGCNGFTDGEIYGQAVHYYDENEIEVGKPIQCQVAVNHVVELTAEEKAEARQNAIRQYQDEEVRRLQ 116
4 -5.130PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]  ali follow..  13  3.............................FQIYGENAGWQLLGWLLVFAGLILANELARRTKVGG-------IFCFLIVPAALTVYFIAIYVGAANGAEWALNNPTYV......................................................................... 74
5 -4.570PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256  ali follow..  9  1MAKKAGKKERSQNYRLVVLNEETFEEKVSFKLSR-VFVVGTLSAVALIAATIVLVAFTSLRE---------------YIPGYASTDLRRQAVSLAEATDSLS---------------QIISYNERYIERIRMVLKGDYAPSQIENDSLDLPFNLDTTTIALTPIREDSILRARVALEDR.. 155
6 -4.430HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;  ali follow..  8  174..............................................................................VSMVLSNTVQLQDWDGR-----------YSRRNKEWAKTIPNDNPETVRCGYALLVREEQQRSRTQREKLEPSRPSVRDKLKQELPAHKSAAPKKREPER... 274
7 -3.500PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  11  4................LLPLEAMEYEINK-GAGNPLEFKGLFIFAGGLVAVLLVVVILYIAGVNQWICIPFGLLSGSLLVWLTFRLNARYGEHG....................................................................................... 85
8 -3.330PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  3  99.....................................................................................................................KRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKRQG 162
9 -3.260PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  14  106..................................................................................................................................AEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESTNAKEHSEIE. 155
10 -2.860PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  8  135..........TVLVLSFKLIARFRNSENIFLMRNLKLIRIMAFSILAYYIIWWGITLVEVYFIQQSFSLAGQPIDIGLFEIPFIFIIYEIFAIGVRM.................................................................................... 229
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;