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Query: PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQWVLTFVEMYGTYFILGSFLLNLLLVLLLIIYNTTTSNLKDKYKRLVKGTDGKNIESVLMQHIEKVEEAQVEVEKVHKRLDIINNRMSFCIQKVGMVRYNAFADMGSDLSYSYALLDENNNGMIITGIYGRSETVTYAKPVKDGKSNYSLSVEELQALQRAKENTIDTLELQGFRSKKELLast
1 -84.700PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali  100  1MQWVLTFVEMYGTYFILGSFLLNLLLVLLLIIYNTTTSNLKDKYKRLVKGTDGKNIESVLMQHIEKVEEAQVEVEKVHKRLDIINNRMSFCIQKVGMVRYNAFADMGSDLSYSYALLDENNNGMIITGIYGRSETVTYAKPVKDGKSNYSLSVEELQALQRAKENTIDTLELQGFRSKKEL 181
2 -4.760PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  10  12........................................ELFYKEMLARTNQTDVYETTRKHIEDLFDFKEGGIMPEHLHQPYQTGTSYKVTRMAYNLWNGYVEEGESLTTPSSLFACEYAAEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESTNAKEHS............ 152
3 -4.550HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  1............................................................................MKDRLSQWKEFYMIFVPMLHYLQNNSFSGNEDGMRYLIT--AKKEEAILTVDLWPEPWTLDKTDPALRRREIFPMTEEGRTAVAQYLNDAYNAEPERWSAHPSIL 118
4 -4.400PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  10  12.........................................................................FSDMKSDSPDLKTAMLGRIRADEVWTPSDFVDLASRDAVDKTLQRLTKAEALR-----RIDRGLYDQPGFNKLTQKPNPPDPRSVIDAVGRRDQTRMLVDGMTAANDL 117
5 -4.310PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  11  28PQPVTALLAAMITPAVLISGAGTLIMST-----STRVGRATDRVRGL-----TSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRALQAFYTSVALLVLTSILLGLDGLFDVNTGSLPLLVALGGSVSLAYGALL---YEARYS----ATTKEEMRFLEELGQHYAELYADEL 194
6 -3.860PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  100.....................................QEYENQLKDILEGVEDVSIVVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNGDKETPVVVQTKKPDIRGVLV---------------VAQGVDNVQIKKTIIEAVTRVLDVPSHRVAVAPKKMKED. 230
7 -3.790PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  164.....................................EDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVIDEYYNEGKTQGICVFGSGYYKKATLILSARIGDEIIETVEEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKA..... 322
8 -3.630PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  10  314..................................KNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAKQASDLLTEGKALSHCVGGSNY--IKQHIEGKTTIIFVRDKQDLEKSLYTLEYKNGQIYQLR----GKHNCDPTKDVQMAANKWAKLLKSKTKVLQN...... 452
9 -3.380PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  13  4..................MKFILACVLLLSPLLCQAQKNLFNKYND--KGVSSVYISKAMMELNPNLFMKDLYIGKVAEHLNSVQKDIRSLVQSSKYELLMKQKSTVSGSEVELIMVMNGASSLKFVYMEGD----MTTDDIKKLMLYQSTSQNFIISGDLFYANNKPVTYFKKGNSDN.. 183
10 -2.920HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  11  21...................................................................DHNETYADQRDRELDSINAFLRN--ENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVINDGCGDYIAKGKTQNVL...................... 110

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.