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Query: PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RQSEDSRHSKYVIRIICEGEKTEPLFFTSLCDKLLDENGGEEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAFEEAEKLIDDKKVNIAFSSRSFEYYLLLHFEYLYHPFHATECGERIDGKKVNYNCMTEKSKENACHGEKCINGYARLKKYWNETKTSQSTFPLIEKRLKAGIINAKRLRIESNSKENCPIYDRNPYTNVDKLVCRLLast
1 -102.000PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali  100  1RQSEDSRHSKYVIRIICEGEKTEPLFFTSLCDKLLDENGGEEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAFEEAEKLIDDKKVNIAFSSRSFEYYLLLHFEYLYHPFHATECGERIDGKKVNYNCMTEKSKENACHGEKCINGYARLKKYWNETKTSQSTFPLIEKRLKAGIINAKRLRIESNSKENCPIYDRNPYTNVDKLVCRL 259
2 -3.840PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  6  233..........ESYFLLAENITPKEAYELGIRSSFEYFGVSADQYINSTTRNRLGTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHLTKIYIAQ---------------------------MPYQVLEIW---------NDHRRLGLPFFEIPANESDLIGSDMVNVLKKDSWKNGQQWDFYPQRMRYPTTLDNA----PENYQKAVEL................................ 424
3 -3.330HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  7  2.......................................................QTNYKRQRMNIFDIAKQNQEKAWQVIKNTNIIQIWEDAGAKINLVGSLRTGLLMKHRDIDSPLNLTDSFQAMARLAENPSIRIECAN--MDMIHI---EGSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPETEKII--------------GVEYYQAV---IRDGVRDYSGFKEWRKQHPVTGVVEWMP........... 203
4 -2.820HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  17  25.................NSFKVPEGYFENLTSEV................................................................................................................................................................................................................................. 41
5 -2.350PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  20  246..................................................................................................DNVYTTFDLDWAV-DSDGNPKHLDHADFIRIQSGVLQQCGWTGETSTEV................................................................................................................ 293
6 -2.270PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  12  17...KEHVKGKKTGLFITLGADPAGEHGESMLKVGRE............................................................................................................................................................................................................................... 49
7 -2.170PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;  ali follow..  5  31..................................................................................................................NPAKNIDDCVTYILNYVQKSGCNGFTDGEIYG-QAVHYYDENEIEVGKPIQCQVAVNHVVELTAEEKAEARQNAIRQYQDEEVRRLQNRNKPRTATKA............................................... 127
8 -2.000PB006101 JCVI_PEP_1096697844517 /source_dna_id=JCVI_ORF_1096697844516 /offset=0 /translation_table=11 /length=371 /full_length=371  ali follow..  6  8............LLYSCDEKPKSGITNPSFLPN------------ASGENNEMLIVMDSTKFKGKIGRELVDIYSSYISGLPQPEPRYDLRYIKPRKFNSILKHAKNIVVAFSLEGNSLDSEILRRNFNSESLDKIQSDSSLFYFNQYVVLYLFSENDDDLYSKIKRNRNSILKFFDDELKKRVDTEIFRKVENNLMDKIFTDHNIKIKIPYGYDLAKSINEEN................................... 214
9 -2.000PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  9  136YQHPTETWQTIEIQPIALGSTKTIKLSDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLA-----SNGNGTFS------PQEKNSLFETYPGFSDWI.............................................................................................................. 287
10 -1.890PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  8  40HVNRKGQYKVFRYPFGKEPKDSDIWNF-----AKKLPSLIKKYDHIKTSSHADSIPQPKKMNPKRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKE--------KRQALKQYKYQLKQEKRHQKRQG............................................................................................................................ 162
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.