|
current user: public |
|
Query: PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . | |||||||
# | Score | Template | Links and tools | %id | First | LEKIISISGRPGLFEVHTQTRTGVVATSLVDGKRINANARNQVSLLSEINIYGLEKEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDEERVYPSDIKKIIQWYNILAEKVPQVFKAETAEEESQEEVAVKEETSSD | Last |
1 | -84.300 | PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152 | ali | 100 | 1 | LEKIISISGRPGLFEVHTQTRTGVVATSLVDGKRINANARNQVSLLSEINIYGLEKEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDEERVYPSDIKKIIQWYNILAEKVPQVFKAETAEEESQEEVAVKEETSSD | 148 |
2 | -3.990 | HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036; | ali follow.. | 4 | 1 | ....MAVSAPPILKTLKTKDMAKTILQQIGGKRFTAMTGSRDFIDMGNLRMSLARNKTSANRLDIIYDEGADLYNMRFYRRTFSKKTFECKTKDIAVHEG--IYFDMLEEMFT................................... | 109 |
3 | -3.890 | HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352; | ali follow.. | 12 | 2 | FSLLLSTFAMMGLTFVIGFFVAGVIIASAADSLAFYSSHQEELARLKRIRKLHQKVATLITESALSDEEYGSDGREDFSRTKHPGDNRGFYHGVSPGESEDYFYPEDTRTMF----LRKEEQMLQHDKKNNKTSSTNKKQ........ | 145 |
4 | -3.760 | PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778; | ali follow.. | 5 | 13 | ..................................................................................DDEKTIEFIRNYLPQELKEKFSEDELYYFLDLDEYYSESGILDVQPDADGYVDIDLEQV....... | 72 |
5 | -3.420 | PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621; | ali follow.. | 22 | 17 | ...........................................................................CSAFSLKKGHSKTVYAFGIAASFTDTVVYFTDIQIL..................................... | 52 |
6 | -3.180 | PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954; | ali follow.. | 10 | 119 | ......IVG-------RADDSYFSFARTFVNNAISLDQLADAMRLGELGKQIVLISSRAFAALQFQDCEIARASTYHVLRNERDVTAREAYRRKSAEADIDGLFMRDIIR...................................... | 216 |
7 | -3.090 | PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404; | ali follow.. | 9 | 151 | .........................AETLISELEGKPRQVNRLAATRIMRVLTFQGDVPYFDAGKGALEG--------EFTPHYTRQDSIYMDLHDELRADLFFNGSIEQWKRFANSL.............................. | 256 |
8 | -3.030 | PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814] | ali follow.. | 11 | 62 | LKVIQKIHEIYPEASVENIGETDFIVTYEEQDGKGGVIHVAKIVMVAAFSTMAFNNDVGVTKMFGQIYELLTGTKSN....................................................................... | 145 |
9 | -3.000 | PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete) | ali follow.. | 17 | 7 | ...........................................ELLDEAVDFCRKRGLEFYAVNSNMPEEEADMSALRSRKVSAD-----------------MYIDDLGGLPDWGVIYEMVHNRWSYNRYLNEIHDFERSQKVS.... | 92 |
10 | -2.880 | PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941; | ali follow.. | 11 | 9 | .EQITPFGGIFCVMEEFDALLSNIIDSTLGPRTKTFGYQYSEISCVEDISTHLMSSADTILRAIKELTVPNITYTSSVSGKSYDFNMADRMNELL..................................................... | 125 |
FFAS is supported by the NIH grant R01-GM087218-01
|
![]() ![]() ![]() ![]() ![]() ![]() |
Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |