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Query: PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLMVQASANSTTMALQKAILVYGVAKRNLYDPDQSLAITHATINDVEMKSGAPVLKAGRLMTQSDLNELVTGLSQSQSLSVPSWIDTTMLALGAGRMIWYTPACQRAMFFKTSSFTKDTFEAQGQLPTPGLVWLVMQGALYVYAYKGSGRPDKETKLYQAPFFNVWSQGKVCTGNAAMPVGDNAAIPHMWVDAFFGSNFTHPNFKEKDRLVKGVCPIDFWKAMTEKPLPVFPEGRLVDLPLTVADLLAPDLNQKLGNIDRAAGLast
1 -106.000PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali  100  1MLMVQASANSTTMALQKAILVYGVAKRNLYDPDQSLAITHATINDVEMKSGAPVLKAGRLMTQSDLNELVTGLSQSQSLSVPSWIDTTMLALGAGRMIWYTPACQRAMFFKTSSFTKDTFEAQGQLPTPGLVWLVMQGALYVYAYKGSGRPDKETKLYQAPFFNVWSQGKVCTGNAAMPVGDNAAIPHMWVDAFFGSNFTHPNFKEKDRLVKGVCPIDFWKAMTEKPLPVFPEGRLVDLPLTVADLLAPDLNQKLGNIDRAAG 263
2 -4.960PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  10  2........................................................................................................................................................SETKERLCIYADFPYEFAVCAPRTDCPKREQLQKITVINPLIPTSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLTYFGKT-ERYITIQEQDYIRDSFVRAG 133
3 -4.300PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  12..............................................................................................................................................................RPPY-QVLASSAI-----TYEEMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSYFAIYEALAA-----WEARGLLRRGHSQRDLFNHLAS........... 95
4 -2.810PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  25.................................................................................................................................................HSHKRRAAEAKGESLPEEPVRVVPPGCCGMHITCEKDSLLTAVSKSIVYYDDEELDRYAGVLPEEYNTEAVEEFEEILSTLQEEEVPIRSLQMRQIQMPISIKEQALFIVSEHRIQH. 143
5 -2.240PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  224....................................................................................................................................LVITDEEIIVKVLESID--------------EYYNEGKTCVFGS--------GYYKKADTLILSARIGDEIIETVEVDLRTLEVVQCHGK---HNQDTEYHERIIDL---VNKNANLIRERMKA....... 322
6 -2.140PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  1MHIDFALPSNGTYNNAGSLANYLEHEDLERMEKGLYTDSFFNLTE-------------NNIYKSKVIKDIDSNIGQLLKTDAKF-----------YAIHVSPSEKELQAMGNTEHEQAE----------SMKRYIREVFIPEYAKNFNKGLSEADIKFYGKINELNMHCHLIVSRKDQSNKKKL------------SPLTNHKNTKKGPIKGGFDRKSLFQQAKLGFGRLFNYDKQLTESFEYYNTMKNGSISDQLNMQE... 225
7 -2.060HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  11  1MLYTAEIKTHQEGKMKETILLFHAPDKDTLLKIEMALFPLVRLRRVAKEDYVQPLGA---FSDNRLNQALAALRKSGAGT-KAILTPTNQNWNALQCFSEIRREHETIQKQLKGNKEQ................................................................................................................................................. 146
8 -2.020PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  102.............................................................................................................................................TFDDGNTETASRPTQVPEDKLDETFTSISP--PGKGQASGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDE-------PMSERLAKAMAVFVDTVNTTVAQPK. 227
9 -1.950PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  146.............................................................................................................................................................................PDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDE-------AMSERLAKAMAVFVDTVNMTVTQQK. 227
10 -1.930PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali follow..  160FYSHYLEVIEQFTYPKYYIASFLKESYNSSV------GHYGQGHEVNYNGNFEEINFFESLGKIPQPLVESFYIDENKNKSI--LFDKVLNNQEEWRKLFWDKYEKNKLTKTKD------------------WTYEKEYRIVLNRLMDYEIKEEDRKLKYDFNCLKG---VIFG-IKTPQNKKDEIIEIIINKCHENNILD---------------FEFYQAFYCKESKNIQHKKLNIINDLIKKAKQNKLDLNIEFL..... 402

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.