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Query: PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SDDIYIKADRNIEVAKKSVTLGDVLKIECVNPAMLARIRSTHLLTFHHPDNKRERRVVMSVLKVIQKIHEIYPEASVENIGETDFIVTYEEQDGKGGVIHVAKIVMVVMISFFGAAFSTMAFNNDVGVTKMFGQIYELLTGTKSNGFTILEFMYCIGIIIGILTFFNHFGKKRLSVDPTPMEVEMRLYENDIQTTLVETYSRKEKELDVLast
1 -95.800PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali  100  1SDDIYIKADRNIEVAKKSVTLGDVLKIECVNPAMLARIRSTHLLTFHHPDNKRERRVVMSVLKVIQKIHEIYPEASVENIGETDFIVTYEEQDGKGGVIHVAKIVMVVMISFFGAAFSTMAFNNDVGVTKMFGQIYELLTGTKSNGFTILEFMYCIGIIIGILTFFNHFGKKRLSVDPTPMEVEMRLYENDIQTTLVETYSRKEKELDV 209
2 -3.590PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  10  1...............................................................................................................................................................MGLGSFYKQRKPRSFDHKPDQRRDELEKRIERIRREVEQEEQAELDGQSS 53
3 -3.550PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  10  2TDSLFWAIDIKNQFHHNWMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLECSEVLAGVKANLISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQQSLLLLCGYKDDADCEGMLLELRSRIGGNN-------SFPHEIGLFIGVAAFMGLVRLPKIYGNPARSLALAEQYRCCRNKMG............. 225
4 -3.440HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  15  29.........................................................FVLVIGVVPRILRCSRIENIILIENVMICTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEILHTFPIIYK-KLRAGLGIIVISMAIGKALGALYYF........................................... 150
5 -3.030PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  11  1.............................................................LEKIISISGRPGLFEVHTQTRTGVVATSLVDGKRINANARNQVSLL-------SEINIYGLEKEVPLQEVLTMIHTKEEGKQCS................................................................ 77
6 -2.890HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  7  116............................................................................VSYVDGDRMVITVPDSAPLLELQQ-------------DVPVGVQLSFDETSYKMMFDALDRTMKAKNNRLAYLRDLFYS...................................................... 182
7 -2.860PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  13  1.....................................................................................................MKIKFLSFIAFFMVSFVITSCLDDDNNIEYSPDA--TIHAFALDTAGLGSYKFTI----------DQLSREIYNEDSLPVHADTIIDKILIK................ 81
8 -2.850HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  5  10........................................................LCLIAYPIISIVSSCSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAEVSIYGTENL............. 160
9 -2.820PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  9  1................................................................MHNFKEKIQFSKIRSRSCP-----FMQQNKFRKAIVAILMPMILVVSFGNC--KVYEVNDGFNIGSGLLAKF-----KTLVMYFPFSILYFVGFFFDLILF-NLI---EFWSGNNPVGYNEYDENGKYVKAYEENGEK....... 131
10 -2.620PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  7  19...............................................................................................AKRTSISGLLISCVMLLIGILSFASTFELEDKSSTV--SMALMVFG-------------TGLFLLGIFRLFWKSKEVVYVPTGSIAKERSIFFDLKHMDKLTDLVNSGSFS... 114
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.