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Query: PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst MNKTVNINLANMLFHIDENAYQKLLRYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQVITQKEVDAVIAIMGQPEDYQVDEDIFEDVPPGTGSAKSRTTRSAKKLYLast
1 -53.000PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali  100  1MNKTVNINLANMLFHIDENAYQKLLRYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQVITQKEVDAVIAIMGQPEDYQVDEDIFEDVPPGTGSAKSRTTRSAKKLY 114
2 -8.980PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  2.....................DTIDNFLDAMFAPYPASTRLTDAKVELRAMMEDAYADAIASGMTITDFGNLQEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRP.. 100
3 -4.410PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  14  1MKTVFNIVLVLCAAALIYICYSSIMGPINFEKAKKEREQAVIARLIDI--RKAQQEYRSLHHGMYTEHFDTLIDFVKN.................................... 76
4 -4.180HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  10  4...............TDNNDDVLVKKFFSENRIDVPDDGFSRRVMRRLPDRTRRI........................................................... 43
5 -3.860PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  13  75.........DGQVVQLSRLLHLVASS--------VDGSRDIETIAHRVSGRFGR------------VSADNVRYLIEQKLDPLGVTVPEGREEEDISAPRSD............ 148
6 -3.370PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;  ali follow..  13  35................EDELYYFLDEYYSESGILDVQPDADGYVDIDLEQVVEFIVKEAKKDEVGEYDPEDILFVVQ..................................... 98
7 -2.520HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;  ali follow..  13  101..................AFYEAFGIFDNSIEKSLVSKNPLVRILALLDRRLGKRRLLALEES................................................... 146
8 -2.400PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali follow..  13  66.......ELAALLESVQRECEEREAVLVREMAEAEGVNEEMKGRMEMICGRVEEVVCEEI...................................................... 126
9 -2.390PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  19  1MNKRLNL-LCIMSAVILYSFYAVSKDMVSGFTAGVRSADIEAKIRNDKNYA............................................................... 55
10 -2.380HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  18  73LDKTDPALRRREIFPMTEEGRTAVAQYLNDAYNAEPERWSAHPSILDCE................................................................. 121

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.