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Query: PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete), from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTTTTNELPAEIMENGIHYTLVGDYYFPTCMLGDKSPNGKWASLYERYLQEKHPHEYVRLIWADELAALLESVQRECEEREAVLVREMAEAEGVNEEMKGNEQMAWVQRMEMICGRVEEVVCEEILast
1 -77.000PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali  100  1MKTTTTNELPAEIMENGIHYTLVGDYYFPTCMLGDKSPNGKWASLYERYLQEKHPHEYVRLIWADELAALLESVQRECEEREAVLVREMAEAEGVNEEMKGNEQMAWVQRMEMICGRVEEVVCEEI 126
2 -3.890HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  13  1LNEKGAIPMKAFDPNYKLLDEMYQDDYYPAFLVDK--------------VKDELQKVIDLLESGETDTEVIQETLDEAVCGINDLQEEFDENDSEIETVARDVTVAYILEWFGIPIDIEEAIRER. 114
3 -3.520HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  17  37...............................................................TKTYEERIRALEKKEQESIEATKKLIAQRKELEKRKKAEESKKRTHRLCQIGGAVESVLGCPI 99
4 -3.400HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;  ali follow..  21  116..........................................................KSLVSKNPLVRILALLDRRLKRRLLALEESMEQEL------------DWVRAFYVIRMQAEGLMEKE. 171
5 -3.330HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;  ali follow..  18  1..............................................................................................................MLNFHSKKVMCIQQEI 16
6 -2.810PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  15  41.................................................................KLTKYL-QLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTLTEK. 99
7 -2.470PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  10  29........................................................................NFEKAKKEREQAVIARLIDIRKAQQEYRSLHHGMYTEHFDTLIDFVKN...... 76
8 -2.400PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  13  8.................................................................NLANMLFHIDENAYQKLLRYLEAVKRSFAGTAGSDE--------IIADIEARIAELFYEKM 60
9 -2.400PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  7  75..................SYHVDHGNGLDCYKVGPTLGGGTTALMAGDTIVYPYCYATQEILDNGPLRFTV-KLVYNPLVVKGDSTIIETRIITLDAGSYCNKTVVSYTNLKETMPLAVGIVLHE. 180
10 -2.190HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  9  27..........................................................ENIIQPDRMENILYDYSYSDNYQKEAYKNYVFEKHHITEAEFDSSMVWYTRHTEELASLYKKLGER.. 102
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.