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Query: PB012954 Q5LF97_BACFN/1-383 PB012954; Pfam-B_12954;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNYKPIYITTLLLLFFLSGRAQKIEELTAVPLQIGYEKTLHLIFPTEVKYYSIGGDYVIGEKVVNCPGIIRLKAAEENFPGETTLSVVTADTKFYSYSISYNAHPAQSYVRIGGEAPTPHTLPVGKEKQLFLIFPAGITYVDYGSTNVEVDKAEGVDNILAVKAVQPYKEDTNISVVLEGGKFYTFDLRYVPAPERFSFVIDKEDTQRVAILDEKERSYGQKERIREAVAKRTPLDLGLRDKNSGMEFEVGNIFIDGDVLLLRMTLTNRTQIGYTTDFMRFYIQDAKIRKKTAVQQLEQNILFTFDYPEEIPAHESRTFTVAMNKFTIPDKKRLIIEIQERNGGRHFLYKLKNKSLLTAEEVFRSRKQQETEDEADKILRRIALast
1 -118.000PB012954 Q5LF97_BACFN/1-383 PB012954; Pfam-B_12954;  ali  100  1MNYKPIYITTLLLLFFLSGRAQKIEELTAVPLQIGYEKTLHLIFPTEVKYYSIGGDYVIGEKVVNCPGIIRLKAAEENFPGETTLSVVTADTKFYSYSISYNAHPAQSYVRIGGEAPTPHTLPVGKEKQLFLIFPAGITYVDYGSTNVEVDKAEGVDNILAVKAVQPYKEDTNISVVLEGGKFYTFDLRYVPAPERFSFVIDKEDTQRVAILDEKERSYGQKERIREAVAKRTPLDLGLRDKNSGMEFEVGNIFIDGDVLLLRMTLTNRTQIGYTTDFMRFYIQDAKIRKKTAVQQLEQNILFTFDYPEEIPAHESRTFTVAMNKFTIPDKKRLIIEIQERNGGRHFLYKLKNKSLLTAEEVFRSRKQQETEDEADKILRRIA 383
2 -87.300PB014120 _Gut.Meta.Jp.0147711_ gi|163636126|dbj|BABG01000147.1||5 (+ 2345:3428~0 complete)  ali follow..  24  1.................SISAQEKKELDSQTIYVSFDKTKHIVLPAQVSDISYGREDVKVERVDNVPNVVRITAQEEDFSGTTNLIIVCTNGNVYSYKISYLLPGMTDHCGNIVDRSRCYNVIVNNNNTTEMFFPADVLYLKQGNEEVFGV--EYYNNMVKVGTTFDAFEPSNLFVIDKDLNTYEI-TLFKDNALTYSYNFDDGRK----YIAHIDVNSIEMDNLINKLHYKKRNIFSLGVIKNKFEMSLANLYVKDDFMFFVFDIKNFSNIDYDVDFIKCFLRDQKKVKNSIQQEVPYDPVEQKDFDKKILGKSQNRFVLAFNKFTIPDDKVFEIEMFERGGGRHMKLSILNEYILSA........................ 341
3 -4.830PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  12  1MKYKILFAMALVLTMCSAFSLKKGHSKTVYAFGIAASFTDTVVYFTDIQILDVSKEGFLTHRDLYSYQLKNYVEDNGLQQNSTCMIYFSENRK.................................................................................................................................................................................................................................................................................................. 97
4 -4.540HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;  ali follow..  20  131....................................................................................................................................................................................................................................................................................................................................................NETSRMLLVKVTYG-MDFGRKRKTAAKRIQNEDTDTGILK... 169
5 -4.420PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  13  1MKVKTSILLLLMIATALPSFGGNGNGNGTDSL--QATRYVTRATMYGVGYTNVFDTYLSPQEYKGIEFRISRETMRMTTLGDGNVSVQNF..................................................................................................................................................................................................................................................................................................... 88
6 -4.230PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  1MKIERLFIYCLLAGTSLLASCNSEDMTDNPVETLSEGMYP-LTFTAMQGEVVATPQTRVSDYDDTDG------KHKSKWDGGEVIGVKIGTD-----------------------GAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKVQLNLEHQLVKFRVKL-----------NGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDTKTSNNFVKIEVYGLTYYYNPDIELVKGTVYTYTVN................................................................................... 261
7 -4.090PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  1MKKTIFYSLFSALFMLTSCSMFEIDNYEEPSETIW----------GEVVDEATGKR--VLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMDGTFQNTKI-------------------KGEYNVRIDGPFIPLVRENTDGTLLHDGSVNTEISGTTKVKFEVQP---FLNVEFVGNPQVSNGVIKAQVRVTRGVSDEVFREKIQPMGNWKDEYLNVTDIQFFVSYSNTVGYRAEGKSFEGLLGKEVTIQSNGNVPSGRKVFVRAAARINYDTPVGSGTRRWNYSE.................................................................................................. 264
8 -3.540HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  11  1..MKKLLLAMIAVAALISFAACDHNETYADQRDRELDSINAFLRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDP----NNNEYVLFESNGIYMQVI............................................................................................................................................................................................................................................................................................ 93
9 -3.480PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  10  1MKRNYFFTMLAAVLLAVAGANAQES---------AEFRPAELA----------GIWQLCHYVSEIPDV-------PGILKPSNTFKVLSDDGRIVNFTM............................................................................................................................................................................................................................................................................................ 73
10 -3.160PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  1MKIKFLSFIASFFMVSFVITS------------LDDDNNIEYSPDATIHAFALDTAGL-------GSYKFTIDQLSREIYNEDSLPVHADTIIDKILIKTLTTASGVVTMKDKSGNNINDSIDLREPLTIKVWSTEALAGISPNQTTIKVNVHQHDPDSLRWNHVGKMQDEGEQKTIEFNNKILTY..................................................................................................................................................................................................... 177

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.