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Query: PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RFYCHEVVQRWISPDGKVTDMALLRGFLFCYCDVWALGSDMEVRPHNSLYDDVVARSCAYPKMRILPQLRRNGFKGDFHGISPVRLFKALLSDPRIETLMKGGEIEVMKHFLFNTRTADECWASYLIAKRHKYQIDNLSMWCDYLRMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGKTQGICVFGSGYYKKADTLILSARIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKALast
1 -119.000PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali  100  1RFYCHEVVQRWISPDGKVTDMALLRGFLFCYCDVWALGSDMEVRPHNSLYDDVVARSCAYPKMRILPQLRRNGFKGDFHGISPVRLFKALLSDPRIETLMKGGEIEVMKHFLFNTRTADECWASYLIAKRHKYQIDNLSMWCDYLRMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGKTQGICVFGSGYYKKADTLILSARIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKA 322
2 -51.100PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  19  266...................................................................................................................NKIPEGVGIVRFQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIK-------------------------DLEKTIDNYAFIVPKQASDLLTEGKALSHCVGNYKQHIEGKTTIIFVRDQDLEKSLYTLEYKNGQIYQLRGKHNC--DPTKDVQMAANKWAKLLKSKTKV 449
3 -3.870PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  52..........................................................................................................................................................................GSMARSIFRRPAAASGEAVQASSYEQAAVECVQNTTDKTVNQQAGDIYNYERPSQLTQWPVQIKLAPVNAPYFDGAKLLADCTA-HEKFIKGHVTLIGCPKLDSVDYSEKLDIQSVTIVRM------EVPCCGGLEMAAKKALQDSGKFIP. 210
4 -3.780PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  38...................................................................................................................................................................SNLKDKYKRLVKGTDGKNIESVLMQHIEKVEEAQVEVEKVHKRLDIINNRMSFCIQKVGMVRY-------------NAFADMGSDLSYSYALLDENNNG-MIITGIYGRSETVTYAK------PVKDGKSNYSLSVEELQALQRAKENTIDTLELQGFR 176
5 -3.740PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  14  1......................................................................................................................................................................................................................................MKIKFLSFIASFFMVSFVITSCLDDDNNIESPDATIFALDTAGLGSYKFTIDQLSREI------YNEDSLP..................... 68
6 -3.200HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  19..............................................................................................................................................................................................................................................AKTILQQGKRFTAMTGSRDFIDMGNGLRMSLARNKTSANRLDIIYDEGRFYRRTFSKKTFECKTKDIAVHEGIYFDMLEEMFTM 110
7 -3.130PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]  ali follow..  11  71............................................................................................................................................FLDFFELLLEANEEI---------NTATVEENIEYLHELMDYYLKEKIQSRKESYVRNIKITFQKLARVTIRNIINLQHNIDNAFKHEPTYQIKI-AKLQNLDKKRINIQRLIDSTEHLILHEERDFFRQATDEELTRILLELR----QELQLSAHSLIRAQQDIINYLNQIKNQVI..... 233
8 -3.020PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  73.....................................................................................................................................................................MAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAFED-IDMAVRTIKKDSP----EAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQ 225
9 -2.890HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  10  70........................................................................................................................................................................................................................................LAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSVTGED-VVVEVSVEARRPAVSSARAGPVDDP..................... 142
10 -2.790PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  73.....................................................................................................................................................................MASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFED-IDMAVHTIWKESP----DEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQ 225

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.