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Query: PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VAWENDLTAFRAYGPALQETGERAFGYDIWTKYNTTEPVVEARYEGELNPDMKAKIAELGKTDPKAAQELYRSVSYHVDHGNGLDCYKVGPTLGGGTTALMAGDTIVYPYCYATQEILDNGPLRFTVKLVYNPLVVKGDSTIIETRIITLDAGSYCNKTVVSYTNLKETMPLAVGIVLHEPDGAIVADAANGYMTYVDPTDNAGGDNGKIFVGAAFPTLVKEAKAVLFPEKEKKELRGGADGHVLAISEYEPGADFTYYWGAAWSKADIKDSAAWNAYMADFAQKVRNPLTVLast
1 -112.000PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali  100  1VAWENDLTAFRAYGPALQETGERAFGYDIWTKYNTTEPVVEARYEGELNPDMKAKIAELGKTDPKAAQELYRSVSYHVDHGNGLDCYKVGPTLGGGTTALMAGDTIVYPYCYATQEILDNGPLRFTVKLVYNPLVVKGDSTIIETRIITLDAGSYCNKTVVSYTNLKETMPLAVGIVLHEPDGAIVADAANGYMTYVDPTDNAGGDNGKIFVGAAFPTLVKEAKAVLFPEKEKKELRGGADGHVLAISEYEPGADFTYYWGAAWSKADIKDSAAWNAYMADFAQKVRNPLTV 292
2 -4.380HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  9  22...VGAYASSTEWNYDNEVAYGFGYGLS-YTTFTQEIQGQPE------ISVNIDSETGAPQAYATFNVKVTNTGKV------GKTSVQIQAPYTEGGL----EKVAIQLLNFEKSSELAPGASEIVVKVDIASYDMEHDNGDGTTGTYVLDPGTYYFAAGNGAHDALNNILVLQG..................................................................................................................... 183
3 -2.960PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  13  70....................................................................................SKWDGGEVIGVGKPTTSTSNIPAYWQSTASQTVYGWYPNTADISLTGQD--GVSSKQYSYKENVQLNLEHQLVKFRVKLNGDVPNLSDAK-----FFYGYPTCKNEYGTVIPQGDKTYATRKVGDYYTAMLAPDTKTSNNFVKI-------EVYGLTYYYNPDIELVKGTVYTYTV................................ 260
4 -2.740HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  8  86...TKHPGDNRGFYHGVSPGESERGLMDYFYPEDTRTMFLRKEEQMLQHDKKNNKTSSTNKKQ..................................................................................................................................................................................................................................... 145
5 -2.710HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  6  10...................................................................................MNIFDIAKQNQEKAWQVIKNTNIIQIWEDAGAKINLVGSLRTGLLMKHRDIDFH-NLTDSFQAMARLAENPSIKRIECANLLHTAEACIEWHAWYQNEENEL-----------WQMD--------------HIREGSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPETEKIIGVEYYQRDGVRDYSGFKEWRKQHPVT....... 196
6 -2.520PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  10  266....TETLA-RVYVE----QKNFSKAKQAYRILSLKYPEKSGFFADQIRAIEKLQEN........................................................................................................................................................................................................................................... 313
7 -2.390PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali follow..  7  19..........................................................................HYTLVGDYYFPTCMLGDKSPNGKWASLYERYLQEKHPHEYVRLIWADELAALLSVQRECEEREAVLVREMAEAEGVNEEMKGNEQMAWVQRMEMICGRVEEVVCEE................................................................................................................ 125
8 -2.310PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;  ali follow..  14  142...EGKPLRVIAYYPAIAGTENFTDGIPFDFTQTNNPQQKEILYNTNTSYTIPSSGGSDKVTIPLKFQHAYSWISIKVTKSVDKGSHKLSGNPATGMAMQGAIQGPIGEVRTAE-MDRNVKDDDLVFTLIIDGFSLGREHLNNDGDTYGFKQGYANT-YNVEFNNSSLNMRLL....................................................................................................................... 351
9 -2.040PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  13  24.....................................................................................VYQLKGEGGSGEMVIAPGIQMSFNQLTMDSTFQSIAPVKKFLQIDY----IEGCYEVEYQTVSFLGEGD.......................................................................................................................................... 94
10 -2.010PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  12  81..........................................................................RYFQFEGEGTLKMDNGITFLPNDRYLLENEKF-----RLYYTAQGDEAHNFIVVVE-------DNFGNSYELEFDFNNRNVKDDGVITVVPIGNFKPLT....................................................................................................................... 167
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;