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Query: PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst METSSIELWHGSSHVIKHPEYGMGKPNNDYGRGFYCTRSIELAKEWACAGLDDGFANRYTLTTDGLTFLDLSQPPYTILNWLALLVENRRFQPTTAVAAQGIEYLRQVFLPDISQADVIVGYRADDSYFSFARTFVNNAISLDQLADAMRLGELGKQIVLISSRAFAALQFQDCEIARASTYHVLRNERDVTAREAYRRKSAEADIDGLFMRDIIREKVTNDDPRLast
1 -123.000PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali  100  1METSSIELWHGSSHVIKHPEYGMGKPNNDYGRGFYCTRSIELAKEWACAGLDDGFANRYTLTTDGLTFLDLSQPPYTILNWLALLVENRRFQPTTAVAAQGIEYLRQVFLPDISQADVIVGYRADDSYFSFARTFVNNAISLDQLADAMRLGELGKQIVLISSRAFAALQFQDCEIARASTYHVLRNERDVTAREAYRRKSAEADIDGLFMRDIIREKVTNDDPR 225
2 -3.190PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  13  64......................................................................................................................................................LTAVSKSIVYYDDEELDRYAGVLPEEYNTEAVEEFEEILSTLQEEEVPSWIRSLQMRQIQMPISIKEQAL-SEHR 140
3 -3.190HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  9  1MNDLIVDVKWGESVGSLYWEKESNAALFDYERKFIRSGLDISPIIMPISQYRNTPYRFLENRTDCFKGLPGLFADSLPDTFGNQIINEWFASKGLSGEE-------------ITPLDRLMGALEFEPSSPINGMNESSVLHIEELTELAKSVFTDRM-LRQEGRNILDILKVGT................................................... 173
4 -3.180PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  10  7......................................................................................................................ISGRHTQTRTGVVATSLVDGKRINANARNQVSLLSEINIYGLEKEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDEERVYPSDIKK......... 110
5 -3.160HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  8  95.......FYHGVSPGESERGLMDYFYPED----MFLRKEEQMLQHDKKNNKTSST.......................................................................................................................................................................... 141
6 -3.060PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;  ali follow..  10  8..................................................................................................................EYNSITKRFLSGNIENSIFVNQQNAMAKKEKKQLKKRLLHKYRMVILNEDTFELIAFTPLKEYIPGYSSTSLKLKATELTYKTDSLETALAINNQYYESI--KKVLSGD.. 143
7 -3.010PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  1  93........................................................................................................................................PKKMNPKRMQRVLNKSKKQSAVSTKAQAEMQK---HEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKRQG................. 162
8 -2.930PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  9  2VCGAKVSLYAEFASVTELYTDEKGCVSITIGLGIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLKKESIEFNDSCVYNDSIAYEYSFAMEYIVCPRIYLE... 252
9 -2.580HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  9  22.....................................................................................................................LLIGKRKDE------DDMAKSTKTYEERIRALE------------KKEQESIEATKKLIAQRKELEKRKKAEESKKRTKLIGFLKRQETNGKFFSKAMQKELVTD... 132
10 -2.450PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)  ali follow..  4  1..............................................................................................................SVLDGFEAVGEKTTTNKMTMTVM---ESSVRFSKGVTEALGCPAYVKLLVNDKQKKIAVQACDAXDENAIKFCKTKRSKADGVDSDAAGKASSVTVRTTDVLVAVQKYF...... 106
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.