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Query: PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete), from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ASAQAKQTVKVLEYCPAPGQFTNKLPEINNTMSAEERLKACEEQLEDGNLVCLGAAGGYITVALDQPIKNGKGSDIRILGNAFYSANDPKYGDATIGGSVEPGIVYVGVGSSPETAEWYELAGSEYYTTEMHRFEITYYKPTVETGEIKTPYITIDNYIRWTASWTNPDGSKQTAEGWQPKNVYHKQSYWPAWEENDQITFRGARLPDNAVNYGGDGSDPDNPQYWVSYRYAADSYGYADAAPNSDNVYTTFDLDWAVDSDGNPKHLDHADFIRIQSGVLQQCGWTGETSTEVGRITNLast
1 -130.000PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali  100  1ASAQAKQTVKVLEYCPAPGQFTNKLPEINNTMSAEERLKACEEQLEDGNLVCLGAAGGYITVALDQPIKNGKGSDIRILGNAFYSANDPKYGDATIGGSVEPGIVYVGVGSSPETAEWYELAGSEYYTTEMHRFEITYYKPTVETGEIKTPYITIDNYIRWTASWTNPDGSKQTAEGWQPKNVYHKQSYWPAWEENDQITFRGARLPDNAVNYGGDGSDPDNPQYWVSYRYAADSYGYADAAPNSDNVYTTFDLDWAVDSDGNPKHLDHADFIRIQSGVLQQCGWTGETSTEVGRITN 298
2 -3.200PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;  ali follow..  12  1..................................................MDIGPCTGEFLVG--DPLVYLGSKYEKEYFQKIPTGEFRTEVKASDGDCDRYAAVRLKFNDNE---------------------ISYFEEAMKGIEDLKDINEGDFFGFNVDAGLACICDKKLHDLYCEFDEKFVKENPDGNAYDDYFADLFKKSYEDNPKYQRDGGDWINWTIPGTDYHLPIFQSGFGDG---------AYPVYLAYDKDGNVCQL--VELIDIELAYSEI-----DEEDE...... 210
3 -2.820PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  104...................................................................................................................................................................................................................................................ADMGSDLSYSYA-LLDENNNGMIITGIYYAKVKDGKSNY-----SLSVEELQALQ 160
4 -2.620PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  12  2.................................................MMSVTFPPGRPLSNF---LLEGTIMKLTVFDGTFW-----------------FALVEHVNRKGQYKVFRYPF-GKEPKDSDIWNF.................................................................................................................................................................... 66
5 -2.600PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  86................................................................................................................................................................................................................................................................ATGERAIIYNAPRVEAITGSLAIILADAMLGELTPAMAAAI. 126
6 -2.420PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  65.....................................................................................................................................................................................................................................................TNRSFVLEANSVQPLNGRVYYVNSTNFVSLNGQAMVQIASNSPYPG....... 112
7 -2.420PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  128......................................................................................................................................................................................................................................................SGPMDFEAQNAFSEDQLEIKISGSSDVKF-----PHNVKLRLGEFSVSGSGD 174
8 -2.350HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  34AKSTKTYEERIRALEKKEQESIEATKKLIA--QRKELEKRKKAEESKKRTHRLCQIGGAVESVLGCPIEEEDLPKLIGFLKRQETNGKFFSKAMQKELVTDMEEV................................................................................................................................................................................................. 136
9 -2.350PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  20  99.....................................................................................................................................................................................................................................................KKLNEGVDEAWAVDKDEHPARKDAFEEAEKLIDDKKVNIAFSSRSFEY..... 147
10 -2.230PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  11  120....................................................................................................................................................................................................................................................KSEASGNIRMDVILSADNKFAAVQLFQFVPYYQPVTAVHYFTNDAAAAVAAFLT 174

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.