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Query: PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTLTFKYLKLFLLAVAMINLTSCEIEIDDFYDDDNIGGSYYNKSLDLCSRPWADTFYDADGNYCYQELNFYLDRHGEDYIRVEYPNGRYSESVYSFTWNWEDRSQYSLRMVYGPGDVSYLDDVWIRGNVLSGYLDGHDNYVDFTGVLast
1 -92.600PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali  100  1MKTLTFKYLKLFLLAVAMINLTSCEIEIDDFYDDDNIGGSYYNKSLDLCSRPWADTFYDADGNYCYQELNFYLDRHGEDYIRVEYPNGRYSESVYSFTWNWEDRSQYSLRMVYGPGDVSYLDDVWIRGNVLSGYLDGHDNYVDFTGV 147
2 -12.300PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  11  1MKIER---LFIYCLLAGTSLLASCNSEDMTDNPVETLSEG-YDDTDGKHKSKWDGG----------EVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYGWYPNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQ.. 165
3 -12.100HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  13  1MRKLVKLILLCLIAYPIISIVSSCSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSL-----RYTADSTVLVFHYSKDVKDTIVIRQKNTSRHLLDSIYIQTAEVSIYGTENLKLFYRN.. 166
4 -11.900PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  14  9KRTSIFKALALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVTKGQTYTIRYFQFEGE--KFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNNRNVKDD........................................ 152
5 -10.900HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  10  1MK----KLLLAMIAVAALISFAACDHNET--------YADQRDRELDS-----INAFLRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVINDGCGDYIAKGKTQNVLCRFTEYCLANR......... 121
6 -10.900PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  9  1MK----TGIRVTVYALLAMILFSCEHKE---------CFHHPHMVTLRVDFDWKNAPQADPEG--MCVYFYPEEGESPIRFDF--------AGKDGGSVEIKEGRYRILCYNNDTESLLF........................... 98
7 -10.800PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;  ali follow..  9  3...KIKQMIKYIATLLLTVLFVACNNGKG----QQPSEENEDPKAKEILQGIWLDDETETPLMRIIGDTIYYSDAQSAPV................................................................... 75
8 -9.510HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  13  1MKTLKITFVMLMTALFLVLPSCSKDDVNVTLTPSEEVVNAFQQKYPDVKNVKWEILVGA-------YEAEFIYSGTKVEAQAYITQGGKWVRSEFDVTKDYQDSSSLVVTIAAKGKKVDDVKLFDWSDRNDYFYVPDSELLINFDG. 160
9 -9.040PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  9  1MKIKFLSF--IASFFMVSFVITSCLDDDNNIEYSPDATIHAFALDTAGLGS-----------------YKFTIDQLSREIYNEDSLPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVINI........................ 104
10 -8.370PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  9  1MK----RNYFFTMLAAVLLAVAGANAQESA-----------EFRPAELAG-IWQIPDVPGILKPSNTFKVLSDDGR---IVNFTMIPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGD.............. 121
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.