current user: public
If you have questions about the server, please let us know.

Query: PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .
# Score Template Links and tools%idFirst MLSDITVRYKLNNSIKDSRFETEHLAKYHLSFQVNFELFRICIVDGDSNRCLFLEDYTLADIYTTNDLLEQLDILFEDHILIKAGFWKSITVGFKNTQFSLIPEALFEKDYLKEYLTLNTTLDREPDEEYHFYKQRQTEAVNVFATNQRLTSWFNKTYPLKQVRYVHHTASMIEGIMLQKDKNAAEKSVFIQVEQYFLTIIVKQGKKLIFCNSFTFNTSEDFVYFILFVFDQLELNPEKCPVVVFGEITHDSESFSKLYKYIRHLTFGSKPEFVRFGYQFDEVFDHRYFDLYNMHLCQLast
1 -109.000PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;  ali  100  1MLSDITVRYKLNNSIKDSRFETEHLAKYHLSFQVNFELFRICIVDGDSNRCLFLEDYTLADIYTTNDLLEQLDILFEDHILIKAGFWKSITVGFKNTQFSLIPEALFEKDYLKEYLTLNTTLDREPDEEYHFYKQRQTEAVNVFATNQRLTSWFNKTYPLKQVRYVHHTASMIEGIMLQKDKNAAEKSVFIQVEQYFLTIIVKQGKKLIFCNSFTFNTSEDFVYFILFVFDQLELNPEKCPVVVFGEITHDSESFSKLYKYIRHLTFGSKPEFVRFGYQFDEVFDHRYFDLYNMHLCQ 298
2 -3.500PB014120 _Gut.Meta.Jp.0147711_ gi|163636126|dbj|BABG01000147.1||5 (+ 2345:3428~0 complete)  ali follow..  7  1.....SISAQEKKELDSQTIYVSFDKTKHIDISYGREDYVKVERVDNVPNVVRITAQEEDFSGTTNLIIVCTNGNVYSYKISDRSRCYNVIVNNNNTTEMFFPADVLYLKQGNEEVFGVEYYNNMVKVGTTFDAFEPSNL-FVIDKDLNTYEITLFKDNALTYSYNFDDGRKYIAHIDVNSIEMDNLINKLHYKKRNIFSLGVIKNKFEMS---NLYVKDDFMFFVFDIKNFSNIDYDVDFIKCFLRDQKKVKNSIQQEVPYDPVEQKDFDKKILGKSQNRFVLAFNKFTIFEIEMFE 322
3 -2.160HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  10  9..............................................................................................................................................................................................................................LFHVLLLI--------NRELLLIGKRKDEDDMAKSTKTYEERIRALEKKEQESIEAT................... 58
4 -1.960PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  15  119..............................................................................................................................................................................................ITVQGSASNVQVKQENNGNVYLSMSVQGIFISATVNLVLYSTVDPNFSGNNLTMNGTLLPYSD............................................. 188
5 -1.930PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  3  1...............................................................................................................................................................................................................MFVAKELRKKSIAEYLLYMWQIIRVYGCSLTRIRKEYIDKFDYTDEQKEEEEDWFGDL................................. 61
6 -1.880HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  12  17.................................................................................................................................LVLPSCSKDDVNVTLTPSEEVVNAFQQKYPDVKNVKWEILVGAYE-AEFIYSGTYSENGQHIVLDKVEAQAYITQGGKWVVDDVKLFDWSDRNDYF------YVEFDEPDSELLINGTL.................................................. 162
7 -1.780PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  7  6.....................................................................................................VPKSIWRTPPRKTVWRRSWAATSKPPSGNLPKSGETRKQPTIKNEFINEKRKMRMNLPKVKMLQVSKCLIGLDMLCGNWESVEGKPDVLIYKEGEAYKVTVFRRSGLLKPETYLLQEENGNLFMNTGFRIDVSYNEATDVLTFSP.................................................... 174
8 -1.760PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  12  62......................................................................................................PALQLEGDNALKNVAAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVLRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNTTLKAINKLASEYD................................................................ 197
9 -1.730HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  9  53....................EEAKKEEAILTVDLWPEPWTL---DKTDPALRRREIFPMTEE------RTAVAQYLNDAYNAEPERWSAHPSILDCEPWT--PAPEPDAETQH......................................................................................................................................................................................... 136
10 -1.700PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  9  1.MKLSQQSLSTIESAIQKAAGCDQTAVTDIHLQPDQTSGQLTIYNDDDEELANVMIEEWATYDGDDNLKSTLCRMKDAGDFDKVTILKPYSFVLVDEDKETVAELLLIDDDTLLV-----------------------DDELLKGLDKELDEFLKNLL............................................................................................................................................ 146
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205