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current user: public |
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Query: PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . | |||||||
# | Score | Template | Links and tools | %id | First | MIEVTDASLQKAAGEGMDEFIQVFTDKYKEVIGGELTAETMPLLTGEQHSLLAYQIFRDEVMFGGFCQLIQNGYGGYIFDNPFAKVMRLWGAEDFSKLVYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVTALVASYVDDHLELFAKIV | Last |
1 | -69.100 | PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697; | ali | 100 | 1 | MIEVTDASLQKAAGEGMDEFIQVFTDKYKEVIGGELTAETMPLLTGEQHSLLAYQIFRDEVMFGGFCQLIQNGYGGYIFDNPFAKVMRLWGAEDFSKLVYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVTALVASYVDDHLELFAKIV | 165 |
2 | -3.870 | HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051; | ali follow.. | 13 | 33 | ...........................................................................................VDKVKDELQKVIDLLESGETDTE-----VIQETLDEAVCGINDLQEEFDENDSEIETVARDCIGVTVAYILE.. | 99 |
3 | -3.810 | PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF | ali follow.. | 5 | 116 | ....................................................................................DTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAP....... | 189 |
4 | -3.300 | PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete) | ali follow.. | 5 | 59 | ............................................AERADRGYSSAWLHHKGRNKHHLEYWIDYAVSKPGDDK--MEGMKMPIRYVCEMFIDRVSASKNYQKEKYTDKSALEYYEKSVDHYMIHPLEYLLVMLSVKGEEYTYSYIKKE........ | 178 |
5 | -2.470 | PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis] | ali follow.. | 17 | 157 | ................................................................................................EDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERL-AMSERLAKAMAVFVDTVNMT..... | 222 |
6 | -2.470 | PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8] | ali follow.. | 12 | 8 | .VQAEQQRLEAVTAQVADV--EQSLEKTKAAAEKQ--KKKLEALQKETKAARATALTVQDIEAMGKKATFGNNI--------------TLTPDECRTLKDYAVSSFAEKAEKLKYKQKYEQAESASVWKRRFEALNEKYLELKKKAQPYLLEIASEKVRAFLDAV | 156 |
7 | -2.440 | PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740; | ali follow.. | 8 | 71 | ............................................................................................KELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDEIAKMLKDQFAQSRKMLDIREKYY----NEFSKIL | 140 |
8 | -2.310 | HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399; | ali follow.. | 11 | 28 | .......................................................................................NIIQPDRMENILYDYH---------SISMGNNLSYSDNYQKEAYKNYVFEKH-HITEAEFDSSMVWYTRHTEELASL. | 95 |
9 | -2.310 | HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167; | ali follow.. | 21 | 39 | ....................................................................................................................................DSVDAEFWVYPEEEIKKLVESLEDKDKVYIKIL | 74 |
10 | -2.290 | PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483] | ali follow.. | 10 | 125 | .LSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGTGILQNIMDSDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTDQEYREVKKSYLSVLSQVQTFIPTAEDGSYSRQLYYYMCGISKW.... | 289 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |