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Query: PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIEVTDASLQKAAGEGMDEFIQVFTDKYKEVIGGELTAETMPLLTGEQHSLLAYQIFRDEVMFGGFCQLIQNGYGGYIFDNPFAKVMRLWGAEDFSKLVYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVTALVASYVDDHLELFAKIVLast
1 -69.100PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali  100  1MIEVTDASLQKAAGEGMDEFIQVFTDKYKEVIGGELTAETMPLLTGEQHSLLAYQIFRDEVMFGGFCQLIQNGYGGYIFDNPFAKVMRLWGAEDFSKLVYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVTALVASYVDDHLELFAKIV 165
2 -3.870HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  13  33...........................................................................................VDKVKDELQKVIDLLESGETDTE-----VIQETLDEAVCGINDLQEEFDENDSEIETVARDCIGVTVAYILE.. 99
3 -3.810PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  116....................................................................................DTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAP....... 189
4 -3.300PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  59............................................AERADRGYSSAWLHHKGRNKHHLEYWIDYAVSKPGDDK--MEGMKMPIRYVCEMFIDRVSASKNYQKEKYTDKSALEYYEKSVDHYMIHPLEYLLVMLSVKGEEYTYSYIKKE........ 178
5 -2.470PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  17  157................................................................................................EDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERL-AMSERLAKAMAVFVDTVNMT..... 222
6 -2.470PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]  ali follow..  12  8.VQAEQQRLEAVTAQVADV--EQSLEKTKAAAEKQ--KKKLEALQKETKAARATALTVQDIEAMGKKATFGNNI--------------TLTPDECRTLKDYAVSSFAEKAEKLKYKQKYEQAESASVWKRRFEALNEKYLELKKKAQPYLLEIASEKVRAFLDAV 156
7 -2.440PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  71............................................................................................KELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDEIAKMLKDQFAQSRKMLDIREKYY----NEFSKIL 140
8 -2.310HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  11  28.......................................................................................NIIQPDRMENILYDYH---------SISMGNNLSYSDNYQKEAYKNYVFEKH-HITEAEFDSSMVWYTRHTEELASL. 95
9 -2.310HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  21  39....................................................................................................................................DSVDAEFWVYPEEEIKKLVESLEDKDKVYIKIL 74
10 -2.290PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  10  125.LSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGTGILQNIMDSDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTDQEYREVKKSYLSVLSQVQTFIPTAEDGSYSRQLYYYMCGISKW.... 289

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.