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Query: PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKREAQNYIDNKLKPPKAFFEWCFSQIPTYKWSNKKETILASNRKNCSVIEQKLRKNSRLTFFGKLNVFGIVLVTSKRIEIQSYAFWNRVVEGKEIIEFDLVNFEQFAEGEHVKVASSDGKMWFGLIPVYGGMSGGPYSMIQLFENDWKEKIRSKSELKYLEIPHLDFKEIETIYKYRVEIEFLQKIKARQLAKEVMYPVTQYTNGSFRKTVDMRTINSKWLKENKPFFKNSDRGFMEFELARRIQKRRGKVVSGIEKYLDYRAINKIPEGVGIVRFQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIKQHIEGKTTIIFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQNLast
1 -127.000PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali  100  1MKREAQNYIDNKLKPPKAFFEWCFSQIPTYKWSNKKETILASNRKNCSVIEQKLRKNSRLTFFGKLNVFGIVLVTSKRIEIQSYAFWNRVVEGKEIIEFDLVNFEQFAEGEHVKVASSDGKMWFGLIPVYGGMSGGPYSMIQLFENDWKEKIRSKSELKYLEIPHLDFKEIETIYKYRVEIEFLQKIKARQLAKEVMYPVTQYTNGSFRKTVDMRTINSKWLKENKPFFKNSDRGFMEFELARRIQKRRGKVVSGIEKYLDYRAINKIPEGVGIVRFQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIKQHIEGKTTIIFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQN 452
2 -51.100PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  19  116.........................................................................................................................................................................................................................................................................RTADECWASYLIAKRHKYQIDNLSMWCDYLRMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERRGLVITDEEIIVKVLESIDEYYNEGKTQGICVF--GS-GYYKKADTLILSARI-GDEIIETVEVDLRTLEVVQCHGKHNQEYHERIIDLVNKNANLIRERMKA... 322
3 -4.660PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  11  6................................................................................................................................................................................................................................................................................................................................................................ASVLNLINPEDIESQ----TILKDAAATALYGSRGANG--VVLITTKSGRRGKTHIAFTAEYG---------SDFATPHALDYMDA--QYAQYTWESLKN 90
4 -4.050PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  11  2........................................................................................................................................................................................................................................................................................FVAKELRKKSIAEYLLYMWQIEDIIRVYGC----SLTRIRKEYIDKFDYTDEQKEEEEFGDLVRMMNQEGCRENGHLQINKVVMQALTELHTQLLASSKFPFYSAEYYRVLPFIVELRGKTKQVADRMAVELYGVMMLRLQKKEISRETETAVKEITTLIGMLSDYYQKDKT 194
5 -3.890PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  13  112...................................................................................................................................................................................................................................................................................................................................................................VQIKLAPVNAPYFDGAKLLADCTA-ASFHEKFIKGHVTLIGCPKLDSVDEKLTEIDIQSVTIVRM----EVPCCGGLEMAAKKALQDSGKFIPWQV. 213
6 -3.610PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  10  35.........................................................................................................................................................................................................................................................................................................................TTTSNLKDKYKRLVKGTDGKNIESVLMQHIEKVEEAQVEVEKVH----KRLDIINNRMSFCIQKVGMVRYFADMGSDLSYSYALLDENNNGMIITGIYGRSETVTYAKGKSNYSLSVEELQALQRAKENTIDTLELQGF 175
7 -3.350PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  11  80............................................................................................................................................................................................................................................................................................................................KEVFKPASDDKPKESIQDYEQEYENQLKDILETIIGVEDVSIVV-ATSLKIFEKNRKTQE--GGKRTVSEMSSDEEIV--IIKNGDKETPVVVQTKKRGVLVVAQGVDNVQIKKTIIEAVTR-VPSHRVAVAPKKM 227
8 -3.180PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  8  1MKIERLFIY-----AGTSLLASCNSE----DMTDNPVETLSEGMYPLTFTEVVATPQTRVSDYDDTDGKHKSKDGGEVIGVKI-VGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYGWY--NTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEH--------------QLVKFRVKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDTKTSNNFVKIEVYGLTYYYNPDIELVKGTVYTYTVNKVDIPYEIIDNNGNSVSGFENISKDISISGTHIPGLTITGTCTVTMNSAAISANGKPGISVEQDNSILSNDSAGILVRKNASVIIKTTASDSKLTVKASNDTPGIGVAEMNTEC--NKIDI-TLDVTGGGYAAAISITIKNSVITACSGKGAAAIGT...................... 446
9 -2.990PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  13  75.........................................................................................................................................................................................................................................................................................................................................................................QTIKQLNAQGVQLSN-ITDENIFDRVARKYGIDYSLKKEVGADPPKYLVFFKAKDV------------DVMTAAFREYAGVELKKKQVKKP 156
10 -2.970PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  10  49................................................................................................................................................................................................................................................................................................................................................PNLFMKDLYIGKVAEHLNSVQVLSTHDNKVREEMAKDIRSLVQSSKYELLMKTVSGSEVYVNRKGSKVKELIMVMNGASSFVYMEGDMT---TDDIKKLMLYQSTSQNFIISGDLF 166
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.