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Query: PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTTVLFRMMVLVAMVVAGIANTELKAQDNNFITNEEKVDDLVVSKVIYRLDGSLYRHMKYDFTYDDQKRVTAKEAFKWDSSTEKWIPYFKIDYAYSSNEITLVYARWNNSHRAYDDSVEKSVYELNDANMPIAYMNYKWNDYKWIEESAGNWAMNIQTPVTDEADLLLAGLast
1 -75.700PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;  ali  100  1MKTTVLFRMMVLVAMVVAGIANTELKAQDNNFITNEEKVDDLVVSKVIYRLDGSLYRHMKYDFTYDDQKRVTAKEAFKWDSSTEKWIPYFKIDYAYSSNEITLVYARWNNSHRAYDDSVEKSVYELNDANMPIAYMNYKWNDYKWIEESAGNWAMNIQTPVTDEADLLLAG 171
2 -11.200PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  12  1MKRNYFFTMLAAVLLAVAGANAQESAEFRPA---ELAGIWQLCHYVSEIPDVPGILKPSNTFKVLSDDGRIVNFTM----IPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLKYFIAKDLNGNELNTWFHETW................ 148
3 -5.340PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  13  1MKTLTFKYLKLFLLAVAMINLTS-------------------------EIEIDDFYDDDNIGGSYYNKSLDL---------CSRPWADTFYQELNFYLDRHGEDYIRVEYPNGRYSESVYSFTWNWEDRSQYSLRMVYGPGDVSYLDDVWIRGNV................ 130
4 -5.280PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  10  1MKKVLVALTMVMGMGSAVAFAQEPVKLPAME------QNQQTSQDKFTKITVKELPQVVKSTLSKDYEGTIVKEAFVAEKENGKVYKSTEEITVLLNEKGEPVN................................................................... 108
5 -5.240PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  11  1MKKLLCMWMVVCGLLLIPGNMKGQSLKD--------NSSAVKNAVTSVTGGKAVTFENLQGTWMYVNAGSLAATEAEK-EYCAKVGIVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKKAINKLASEYDG 198
6 -5.100PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  6  13IFKALALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVVEIRCELKKTGDFANTLYTIRYEGEGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNNRNVKDDGVITVVPIGNF............................ 163
7 -5.050HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  6  1MKTLKITFVMLMTALFLVLPSCS-----------DDVNVTLTPSEEVVNAFQQKYPDVKNVKWEILVGA----EAEFIYSGTYSENGDKVEAQAYITQGGKWVRSVTKDYQDSSSLVVPRAVRETIAAKGKKVDDVKLFDWSDR-FDEPDSELLINFDGTL.......... 162
8 -4.850PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  13  1MKTGIRVTVYALLAMILFS--------EHKELCFHHPHMVTLRVDFDWKNAPQADPEGMCV-YFYPEEGESPIRFDFAGKDGGSVEIKEGRYRICYNNDTESLLFRGMEGFDT.......................................................... 106
9 -4.460PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  5  1MKVKTSILLLLMIATALPSFGGNGNGNGTD----SLQATRYVTRATMYGVGYTNVFDTYLSPQEYKGIERISRETMRMTTLGDGNVSVQNFFQANLAVDNNNTFAGLVNWNYGLHYQFRITDNFKLLAGGMGDFNGGFVYNLR----NTNNPASARAYINLDASGMAIWH. 168
10 -3.890PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;  ali follow..  11  42.................................................................................PHGRWQKRDVLDYEILIPDYTRSY-------SLELLIRHDNRYEYR---DLALAYEVSVGERLIFADSVDLTLADKPQQ........... 110
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;