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Query: PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFVAKELRKKSIAEYLLYMWQIEDIIRVYGCSLTRIRKEYIDKFDYTDEQKEEEEDWFGDLVRMMNQEGCRENGHLQINKVVMQALTELHTQLLASSKFPFYSAEYYRVLPFIVELRGKTKQVADRMARKNEANLKEIAANLGHSEVETCFDVLYGVMMLRLQKKEISRETETAVKEITTLIGMLSDYYQKDKTEGLQFLast
1 -99.500PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali  100  1MFVAKELRKKSIAEYLLYMWQIEDIIRVYGCSLTRIRKEYIDKFDYTDEQKEEEEDWFGDLVRMMNQEGCRENGHLQINKVVMQALTELHTQLLASSKFPFYSAEYYRVLPFIVELRGKTKQVADRMARKNEANLKEIAANLGHSEVETCFDVLYGVMMLRLQKKEISRETETAVKEITTLIGMLSDYYQKDKTEGLQF 199
2 -4.070PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  11  281.IIKNKVDFSYYLDYLNLMRDLNIAIDSENINLVIAHDNAVKLLYQMKHEVEEQQ--YKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIKQHIEGKTTIIFVRDKQDLEKSLYT------------------LE-----YKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQN..... 452
3 -3.890HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  7  29.IIQPDRMENILYDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDSSMVWYTR-------------------------------------HTEELASLYKKLGERFRSEKKHMQELLALRENKP.................................................................... 121
4 -3.250PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  9  2.........DTIDNFLDAMFA-------------------YPASTRLTDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVL-LTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQELAEARRRGAASLGLSVAILVSTGIPLFAFRLSETGLVPFNEDTATFLALAVDLPFTNVKHLVDLEFTP 193
5 -3.020PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  9  40.....................................AKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTLTEKQYSDYLRLMAL........................................................................................... 110
6 -3.010HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  16  53.....EEAKKEEAILTVDLWP-----EPWTLDKTDPALRRREIFPMTEEGRTAVAQYLNDAYNAEPERWSAHPSILD.......................................................................................................................... 119
7 -2.940HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;  ali follow..  9  10....KEAEKRLSTRQFIGAKEITDLVTYGQGELVYFIVKPTNISVLSESSVGARIYALMTVLKGVAEIEMLCLNSRESFEDNKRFLKS----QMEQEENPVIRRLLEQDQTHLDRIQVQMATAREFLIMLRLKDEKESDIFPYLSRIEKSLKEQ-SFSVKRADKEDIKR.............................. 171
8 -2.410PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  12  30.FIGRKTKNRR--SIIVQKLGKKELIRQLDISFEQVSDEIIEYFNIQEGDFHTVESCKYNVPSVQAIGKVYHR--ISEQDNLVDVLFEVFNSFISDEISDFNSSVYYSNPEYLKY.................................................................................... 151
9 -2.240PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  12  94........KASLGEFSFMAAPSEGFVSRGDLYLDLLQIVLNAAEVKKLIVVPFNEEYGKEVENVLRECALENAGHKEEAKDIV.................................................................................................................... 168
10 -2.150PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  10  65......................................................................................................RKVWPYAKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKL-GQILVKLIHRQTGVTTFQLIKNLRSGWRALKSEYNPVNNRE... 174
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.