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Query: PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst MGLEDDFLLNDADDEKTIEFIRNYLPQELKEKFSEDELYYFLDLIDEYYSESGILDVQPDADGYVDIDLEQVVEFIVKEAKKDEVGEYDPEDILFVVQGEMEYGNSLGQVLast
1 -59.000PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;  ali  100  1MGLEDDFLLNDADDEKTIEFIRNYLPQELKEKFSEDELYYFLDLIDEYYSESGILDVQPDADGYVDIDLEQVVEFIVKEAKKDEVGEYDPEDILFVVQGEMEYGNSLGQV 110
2 -7.720PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  10  81LSRLLHLVASSVDGSRDIETIAHRVSGRFGREVSADNVRYLIE---QKLDPLGVTVPEGREEEDISAPRSDLLLALKGHR------VIFNERRVATIAGALAWL...... 175
3 -6.650PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;  ali follow..  18  37..............DDCVTYILNYVQKSGCNGFTDGEI---YGQAVHYYDENEIEVGKPIQCQVAVNHVVELTAEEKAEARQNAIRQYQDEE.................. 111
4 -5.350PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  10  41.............MQMQTNQMVRAL------MLDDATAAKFTPIYEKYLKEPVMTDAEIAKMLKDQFAQSRKMLDIREKYYNEFSKILSQKQIMKIYQQEKSNMNKF... 159
5 -3.760PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  83............PADELEAYFFDVFQDYDEERVYPSDIKKIIQW-YNILAEKVPQVFKAETAEEESQEEVAV...................................... 141
6 -3.370PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  13  17..................................DENAYQKLL---RYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQVITQKEVDAVIA............ 77
7 -3.030PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  32..............KWDGTINKAKLTKYLQ--LSSQQNEQVASICDYFQEQMKVANSSKKN----------------SDQKVRNAVYGNLKLMKNTLTEK.......... 99
8 -2.980HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  13  70..............EKALRQYCGRLHAERTGAYLPRALQGVLEGTLGVFGER--LAVEHNMTNHLLGGDMDMTRDEYSKMRGSSVREVSATHGTISFKDVMVFYKE.... 166
9 -2.920PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  10  27..............VERLKGYLDGLPPETCRRIV---MLAAFAVLALYTFGRAAYDIGRNDGSRMETGHAGRVELPTPAETDNHLTPYL..................... 100
10 -2.770PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  67...............GELERCFLAMPESVLPIVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVTFLNRNFIRIQTSTVGEVFMRILPFSDSSSVI............. 149

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.