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Query: PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLFQIYGENAGWQLLGWLLVFAGLILANELARRTKVGGIFCFLIVPAALTVYFIAIYVGAANGAEWALNNPTYVHMNSWFHYAKLYAATAGCIGFMMLKYKWKIGKTNWFKVFPFVIVAINILIAVVSDFESGVRGAMALAEYGDRWWLSSENVWLYGGWWNWVNGIAGILNILCMTGWWGIYSSKDKKDMLWPDMTWCFIIAYDLWNFEYTYNNLPTHAWYCGLALLLAPTFANALWNKGGWIQNRANTLALWCMFAQVFPMFQDTSRLast
1 -133.000PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]  ali  100  1MLFQIYGENAGWQLLGWLLVFAGLILANELARRTKVGGIFCFLIVPAALTVYFIAIYVGAANGAEWALNNPTYVHMNSWFHYAKLYAATAGCIGFMMLKYKWKIGKTNWFKVFPFVIVAINILIAVVSDFESGVRGAMALAEYGDRWWLSSENVWLYGGWWNWVNGIAGILNILCMTGWWGIYSSKDKKDMLWPDMTWCFIIAYDLWNFEYTYNNLPTHAWYCGLALLLAPTFANALWNKGGWIQNRANTLALWCMFAQVFPMFQDTSR 269
2 -5.160PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  8  1..........................MNELIRRLSDASRLVPLALLAVVAAVIYVWRPLFHGLIYRVAYSPSLLIL--VGTTVVAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDFPT..................................................................................................................... 129
3 -5.120PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  13  30..YRLPRAVTWRALGYFAAVEAGLVAFRFLPPFKWIFGLMYYGVIPLFLVWGADKYKTDGKSLFSFVRSWITFR................................................................................................................................................................................................... 108
4 -3.950PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  9  1.............................MLRRS--VPKSIWRTPP---FTVWR---------RSWAATSPPSGNLPKSGETRK--QPTIKNEFINEKRKMRMNLPKVKMLQVSKCLIGLAVM.................................................................................................................................................. 86
5 -3.510HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  12  1..............................MRKFNYKRLIVMLVVVLAITCLMATTAFAAGTGSTWSTASTQIKSVVDNVVFPAIDLILAVFFFAKLGTAYFEYRKSGQFEWAAPAILFACLV.................................................................................................................................................. 100
6 -3.360PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  14  125..........CYFVMVVLLITVLVLSFKLIARNLKLIRIMAFSILAYYIIWWGITLVEVYFIQQSFSLAGQPIDIAGSLDFPNGLFEIPFIFIIYEIFAIGVRMREEN................................................................................................................................................................. 233
7 -3.170PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  11  16...KVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQPLE............................................................................................................................................................................................................ 77
8 -2.740PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  4  1..............MMMSVTFPPGRPLSNFLLEGTIMKLTVYF-------TFWFALVEHVNRKGQYKVKEPKDSDIWNFI............................................................................................................................................................................................. 67
9 -2.610HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  12  53.LLMKHRDIDFHIYSSPLNLTDSFQAMARLAENPSIKRIECANLLHTAEACIEWHAWYQNEENELWQMDEGSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPETE--------IIGVEYYQAVIRD............................................................................................................................................ 178
10 -2.440HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  7  2..........MRRKNITWVWLLGAAFMENIIQPDRMENILYDYHLSISMGNNLSYSDNYQKEAEKHHITEAEFDSSMVWYELASLYKKLGERF................................................................................................................................................................................ 103
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;