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Query: PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PVCGAKVSLEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLKVRESSYKYRPVYKDNIAHEDSIVYKESIEFNDSCVYNDSIAYEYSFAMEYIVCPRIYLEELTAYLast
1 -116.000PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali  100  1PVCGAKVSLEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLKVRESSYKYRPVYKDNIAHEDSIVYKESIEFNDSCVYNDSIAYEYSFAMEYIVCPRIYLEELTAY 257
2 -6.040PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  13  46RVLGIRVRLTELSWGDNVQHPDFYCMMDGTFQNTIFKGEYNVRIDGPFVRENTDGTLLHDGSVNTEISGTTKVKFE----------VQPEFVGNPQVSNGVIKAQVRVTRGVSDEVFREKIQPMGNWKDEYLNVTDIQFFVSYS................................................................................................................. 194
3 -5.480PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  1.MRKELHNTKVT-------VRLRKSAYRNEWYLYIESYPVYTAGKSEPQ--------RVREYLNRIVTTVVWDKTRTARTTSSSKS---YKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAE--QKERLQQNFIGYFREAMYKRHKNKRAMDFLKMYAGENLPKIDNAFAEEY.................................................................. 181
4 -4.110PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  65.................................IIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSF--------------------EDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFT----RITERLTDEAMSERLAKAMAVFV................................................ 216
5 -3.680PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  11  43..PGIQMSFNQLTMDSTFQSIAPVKK-EGCYEVELGEGDLCVTDLSRQVFVSSRLPLRKYRGVTLFLEVEKAQHPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKLSEVDERIQAPYYW...................................................................................................................................... 184
6 -3.600PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  13....................................................................................DTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAKLHGEYQGSGFTEPKYIARRGDGQVVQL-------------SRLLHLVASSVDGSRDIETIAHRVSGRFGREVSADNVRYLIEQKLDPLGVTVPEGREEEDISAPRSDLLLA---LKGHRVIFNERRVATIAG. 170
7 -3.480PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  65.................................IIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAF--------------------EDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYS----RITERLTDEPMSERLAKAMAVFV................................................ 216
8 -3.470PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  13  60.................................IMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRDDLDNAGNVLFKLNDADKDEEKSLRATDLFEIFSSQVENKNVIDSLMGKYDGNGNPLSVRKTKSVVPVSDGWKQ........................................................................... 222
9 -3.160PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  51.....GMCVYFYPEEGESPIRFDFAGKDG-GSVEIKEGRYRILCYNNDTESLLFRGMEGFDTHEGYTRDGNVFESIYGNG-AHYAPPAKGSEDERVVICPDMMWGSCARNVEITELGLSYECISFADKDKVEWIESSEHVITLYPAELICTYTYEVRNVKNMEYMTQACGSLSSMAPS............................................................................... 221
10 -3.020HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  130..GSLDFTATIVHEGS----GNYLVDSDSGRVLTITSGQETIYKSDVCPADSRLLLMAKGDKDVQKVT............................................................................................................................................................................................. 192

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.