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Query: PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482], from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . | |||||||
# | Score | Template | Links and tools | %id | First | MYIFRSIHEIINTIFVAKGLLVEMFEKRKVLSFRYSDALALLKEDENRLKILIEKEIIHQNGNFVELDARFLDFFELLLEANEEINTATVEENIEYLHELMDYYLKEKIQSRKESYVRNIKITFQKLARVTIRNIINLQHNIDNAFKHEPTYQIKIAKLQNLDKKRINIQRLIDSTEHLILHEERDFFRQATDEELTRILLELRQELQLSAHSLIRAQQDIINYLNQIKNQVILVEKIRKVKYLQDQFELRARSNLSEIMERERSLLLEGNTQASFKLSPSYLASDEVRPIILKVISNQKYREIVRKNEAGAFSEEDLEAQAMYEEVINLDEVVTAFVQSGAEARWKGEPVSDLFSFLLQYHFHREVDEKERTTFFCQIVSLYESQLEIRNEFGLHNQYEYAKIY | Last |
1 | -97.200 | PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] | ali | 100 | 1 | MYIFRSIHEIINTIFVAKGLLVEMFEKRKVLSFRYSDALALLKEDENRLKILIEKEIIHQNGNFVELDARFLDFFELLLEANEEINTATVEENIEYLHELMDYYLKEKIQSRKESYVRNIKITFQKLARVTIRNIINLQHNIDNAFKHEPTYQIKIAKLQNLDKKRINIQRLIDSTEHLILHEERDFFRQATDEELTRILLELRQELQLSAHSLIRAQQDIINYLNQIKNQVILVEKIRKVKYLQDQFELRARSNLSEIMERERSLLLEGNTQASFKLSPSYLASDEVRPIILKVISNQKYREIVRKNEAGAFSEEDLEAQAMYEEVINLDEVVTAFVQSGAEARWKGEPVSDLFSFLLQYHFHREVDEKERTTFFCQIVSLYESQLEIRNEFGLHNQYEYAKIY | 405 |
2 | -3.710 | HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074; | ali follow.. | 10 | 10 | .................................KKNYAIDELGLSAQAARNLYAGKALLESPRFLDLTYILEQYFNDTVAAG----YAAQNQLYTTISSLTRKTVKTEAGEQAARDIAHLRTSLVTIENQFMLAVKEVKKEIGNDFAAMQS-----MTAEAAKRMFTEVAKGQDMTNPTITPEQVSDLIYRSVAGLDGCHRDALNTLGQALTGFFQNHLRAAQYRRKAMKRQD--EQLCALAQKGTQ.............................................................................................................................................................. | 225 |
3 | -3.130 | PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946; | ali follow.. | 11 | 141 | ......................................................................WCDYLRMLKKLGQDLDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVESIDEYYNEGKTQGICVFGSGYYKKADTLILSARIGDEIIETVEVDLRVQCHGKHNQDTEYHERIIDLVNKNANLIR............................................................................................................................................................................ | 317 |
4 | -2.390 | PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086; | ali follow.. | 10 | 73 | .........................................................................................................ADTVRNNANEYNALLNGDAADAAAVKAEQVKDLGKELKASAPEYEG-AENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSDGKVAD...................................................................................................................................................................................... | 197 |
5 | -2.380 | HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352; | ali follow.. | 7 | 39 | .................................................................................................................................................YSSHQEELARLKRIRKLHQKVATLITESALSDEEYGSDGREDFSRGVTKHPG----DNRGFYHGVSPGESER--GLMDYFYPEDTRTMFLRKEEQMLQHDKKNNKTSSTNKKQ................................................................................................................................................... | 145 |
6 | -2.360 | PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025; | ali follow.. | 10 | 18 | ...........DSPDLKTAMLGRIRADEPRKVWTPSDFVDLASRDAKTLQRLTKAEALRRIDRGLYDQPGFNKLTQKPNPPDPRSVIDAVGR-----RDQTRMLVDGMTAANDLGLTDAVPAKIVVHTDARRRAIKLGNATITFR-------PTAASKLFWAGRPAMRVVQALHWLRD----------LLVRDGESEQIQRKLAKLFEDPAVGPPL-KADLAAGMTALPTWML-----VFLKPLIETDPDDRGQHPDNVHAAADQD........................................................................................................................................... | 246 |
7 | -2.210 | PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8] | ali follow.. | 8 | 5 | ...................................................................................QFKVQAEQQRLEAVTAQVA---VEQSLEKTKAAAEKQKKKLEALQKET-----KAARATALTVQDIEAMGKKATFGNNITLTPDECRTLKDYAVSSFAEKAEKLKYKQKYEQAEKSASVWKRRFEALNEKYLELKKKAQPYLDALEIASEKVRAF....................................................................................................................................................................... | 152 |
8 | -1.750 | HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669; | ali follow.. | 9 | 1 | .........................................MAQQKNEVQSLLEKAMFQATVADFWGLELGVIKTNQRDEASPKEVCSGIPQFIIGVKGLAGFLGTSVSTVNRWKACGLLDDATLQCGKVVIFELPKVIEILRVS-DKKNKFNVKSKKYNGKESN................................................................................................................................................................................................................................................ | 125 |
9 | -1.750 | HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075; | ali follow.. | 9 | 4 | .........................................................................................................EKRKAKKEAEKRLSTRQFI---------GAKEITDYSLVTYGQGELVYFIVKPTNISVLSESSVGARIYALMTVLKGAEIEMLCLNSRESFEDNKRFLKSQMEQEENPVIRLLEQDQTHLDRIQVQMATAREFLIMLRLKDEKESDIFPYLSRIEKSLK----------EQSFSVKRADKEDIKRILAVYYEQ........................................................................................................... | 179 |
10 | -1.730 | PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904; | ali follow.. | 10 | 40 | ................................................................................................................GNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVAKGSNENML-ERSKTLWALNDQLS............................................................................................................................................................ | 178 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11. |