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Query: PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYIFRSIHEIINTIFVAKGLLVEMFEKRKVLSFRYSDALALLKEDENRLKILIEKEIIHQNGNFVELDARFLDFFELLLEANEEINTATVEENIEYLHELMDYYLKEKIQSRKESYVRNIKITFQKLARVTIRNIINLQHNIDNAFKHEPTYQIKIAKLQNLDKKRINIQRLIDSTEHLILHEERDFFRQATDEELTRILLELRQELQLSAHSLIRAQQDIINYLNQIKNQVILVEKIRKVKYLQDQFELRARSNLSEIMERERSLLLEGNTQASFKLSPSYLASDEVRPIILKVISNQKYREIVRKNEAGAFSEEDLEAQAMYEEVINLDEVVTAFVQSGAEARWKGEPVSDLFSFLLQYHFHREVDEKERTTFFCQIVSLYESQLEIRNEFGLHNQYEYAKIYLast
1 -97.200PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]  ali  100  1MYIFRSIHEIINTIFVAKGLLVEMFEKRKVLSFRYSDALALLKEDENRLKILIEKEIIHQNGNFVELDARFLDFFELLLEANEEINTATVEENIEYLHELMDYYLKEKIQSRKESYVRNIKITFQKLARVTIRNIINLQHNIDNAFKHEPTYQIKIAKLQNLDKKRINIQRLIDSTEHLILHEERDFFRQATDEELTRILLELRQELQLSAHSLIRAQQDIINYLNQIKNQVILVEKIRKVKYLQDQFELRARSNLSEIMERERSLLLEGNTQASFKLSPSYLASDEVRPIILKVISNQKYREIVRKNEAGAFSEEDLEAQAMYEEVINLDEVVTAFVQSGAEARWKGEPVSDLFSFLLQYHFHREVDEKERTTFFCQIVSLYESQLEIRNEFGLHNQYEYAKIY 405
2 -3.710HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  10  10.................................KKNYAIDELGLSAQAARNLYAGKALLESPRFLDLTYILEQYFNDTVAAG----YAAQNQLYTTISSLTRKTVKTEAGEQAARDIAHLRTSLVTIENQFMLAVKEVKKEIGNDFAAMQS-----MTAEAAKRMFTEVAKGQDMTNPTITPEQVSDLIYRSVAGLDGCHRDALNTLGQALTGFFQNHLRAAQYRRKAMKRQD--EQLCALAQKGTQ.............................................................................................................................................................. 225
3 -3.130PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  11  141......................................................................WCDYLRMLKKLGQDLDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVESIDEYYNEGKTQGICVFGSGYYKKADTLILSARIGDEIIETVEVDLRVQCHGKHNQDTEYHERIIDLVNKNANLIR............................................................................................................................................................................ 317
4 -2.390PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  10  73.........................................................................................................ADTVRNNANEYNALLNGDAADAAAVKAEQVKDLGKELKASAPEYEG-AENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSDGKVAD...................................................................................................................................................................................... 197
5 -2.380HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  7  39.................................................................................................................................................YSSHQEELARLKRIRKLHQKVATLITESALSDEEYGSDGREDFSRGVTKHPG----DNRGFYHGVSPGESER--GLMDYFYPEDTRTMFLRKEEQMLQHDKKNNKTSSTNKKQ................................................................................................................................................... 145
6 -2.360PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  10  18...........DSPDLKTAMLGRIRADEPRKVWTPSDFVDLASRDAKTLQRLTKAEALRRIDRGLYDQPGFNKLTQKPNPPDPRSVIDAVGR-----RDQTRMLVDGMTAANDLGLTDAVPAKIVVHTDARRRAIKLGNATITFR-------PTAASKLFWAGRPAMRVVQALHWLRD----------LLVRDGESEQIQRKLAKLFEDPAVGPPL-KADLAAGMTALPTWML-----VFLKPLIETDPDDRGQHPDNVHAAADQD........................................................................................................................................... 246
7 -2.210PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]  ali follow..  8  5...................................................................................QFKVQAEQQRLEAVTAQVA---VEQSLEKTKAAAEKQKKKLEALQKET-----KAARATALTVQDIEAMGKKATFGNNITLTPDECRTLKDYAVSSFAEKAEKLKYKQKYEQAEKSASVWKRRFEALNEKYLELKKKAQPYLDALEIASEKVRAF....................................................................................................................................................................... 152
8 -1.750HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  9  1.........................................MAQQKNEVQSLLEKAMFQATVADFWGLELGVIKTNQRDEASPKEVCSGIPQFIIGVKGLAGFLGTSVSTVNRWKACGLLDDATLQCGKVVIFELPKVIEILRVS-DKKNKFNVKSKKYNGKESN................................................................................................................................................................................................................................................ 125
9 -1.750HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;  ali follow..  9  4.........................................................................................................EKRKAKKEAEKRLSTRQFI---------GAKEITDYSLVTYGQGELVYFIVKPTNISVLSESSVGARIYALMTVLKGAEIEMLCLNSRESFEDNKRFLKSQMEQEENPVIRLLEQDQTHLDRIQVQMATAREFLIMLRLKDEKESDIFPYLSRIEKSLK----------EQSFSVKRADKEDIKRILAVYYEQ........................................................................................................... 179
10 -1.730PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  10  40................................................................................................................GNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVAKGSNENML-ERSKTLWALNDQLS............................................................................................................................................................ 178
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;