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current user: public |
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Query: PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . | |||||||
# | Score | Template | Links and tools | %id | First | MRKELHNTKVTVRLRKSAYRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAP | Last |
1 | -87.500 | PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF | ali | 100 | 1 | MRKELHNTKVTVRLRKSAYRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAP | 189 |
2 | -5.890 | PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361; | ali follow.. | 6 | 1 | MKIERLFIYCLL-PVETLSEGMYPLTFTAMQGEVVATPQTRVSDYDDTDGKHKSKWDGG----------------------------EVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYGWYDISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQ----LVKFRVKLNGD. | 176 |
3 | -5.500 | PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg] | ali follow.. | 8 | 2 | VCGAKVSLEILVTELYTDEKGCVSITIGLGDIHIRAVKDGFRTQEEITLILNDNLLSKDWVTDSWEMCEVKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILAKGNFMEIYRFLTVDGNNVDSN---------QDRLALLKTLKVKDYK--DVTASVLEDH........ | 191 |
4 | -3.810 | PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697; | ali follow.. | 5 | 85 | ...................................................................................................................KVMRLWGAEDFSKLVYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVTALVASYVDDHL | 158 |
5 | -3.470 | PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610; | ali follow.. | 0 | 65 | .SYKILHVNFMLVSSDPSVTGYKSVMMRL................................................................................................................................................................ | 92 |
6 | -2.790 | PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8] | ali follow.. | 21 | 74 | .........................................................................................................................................................KQTIKQLNA-QGVQLSNIKITDENIKSFDRVARK.. | 106 |
7 | -2.730 | HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075; | ali follow.. | 9 | 12 | .AEKRLSTRQFIGAKEITYGQGELVYFIVKPTNISVLSESSVGARIYALMTVLKGVAEIEMLCLNS---RESFEDNKRFLKSQMEQEENPVIRRLLEQDQTHLDRIQVQMATAREFLIMLRLKDEKESDIFPYLSRIEKSLKEQSFSVKRADKEDIKRILAVYYEQNVTTEKFED----DGERWI--IP | 197 |
8 | -2.680 | PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473; | ali follow.. | 16 | 4 | .....................................................................................................................................................LLPLEAMEYEINKGAGNPLEFKGLKSQYLFIFAGGL.... | 39 |
9 | -2.610 | PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete) | ali follow.. | 11 | 2 | ....................................................................................................................................................SVREGELLDEAVDFCRKRGLEFYAVNSNMPEEEADM..... | 37 |
10 | -2.570 | HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234; | ali follow.. | 6 | 3 | ..........................................................................................................................................KKKRGEERMKEEDNILKKVGKKNSFKVPEGYFENLTSEVMGKLPE...... | 47 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98. |