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Query: PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATQAIDATIFASSHPDIAKRTSISGLLISCVMLLIGILSFASTFELEDKSSTVSMALMVFGTGLFLLGIFRLFWKSKEVVYVPTGSIAKERSIFFDLKHMDKLTDLVNSGSFSADSKIKSEASGNIRMDVILSADNKFAAVQLFQFVPYTYQPVTAVHYFTNDAAAAVAAFLTKSQLLast
1 -104.000PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali  100  1MATQAIDATIFASSHPDIAKRTSISGLLISCVMLLIGILSFASTFELEDKSSTVSMALMVFGTGLFLLGIFRLFWKSKEVVYVPTGSIAKERSIFFDLKHMDKLTDLVNSGSFSADSKIKSEASGNIRMDVILSADNKFAAVQLFQFVPYTYQPVTAVHYFTNDAAAAVAAFLTKSQL 178
2 -6.490PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  17  1........ASYISVPRDLTK-LTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLA-IQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKK........................................ 152
3 -4.350PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  9  90.EKRLIIRQLPRLSRRTRFLMRALQAFYTSVALLVLTSILLGLDGLFDVNTGSLPLLVALGGSVSLAYGALLLS........................................................................................................ 162
4 -4.270PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  18  5...........................AIGGLLMAVGTGLYAFFIIQD-----VACIVMLIGAICFATM............................................................................................................. 41
5 -3.480PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  13  15..............NKGAGNPLEFKGLKSQYLFILVAVLLVVVILYIAGVNQWICIPFGLLSGSLLVWLTFRL......................................................................................................... 77
6 -3.250PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  8  2................NILNNKNKRTSIFKALALCLFAAVSFTFVSCDDD................................................................................................................................ 35
7 -3.180PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  16  1.......................MKKTIFYSLFSALFMLTSCSMFEIDNYEEPSET---IWGEV----------------VDEATGKRVL--------------TDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQNTKIFEY............................... 93
8 -3.140PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  20  1.................MNKRLNLYCTILLCIMSAVILYSFYAVSK.................................................................................................................................... 29
9 -3.050PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;  ali follow..  9  1..........................................................MEIQFVIVRSENAEYLCHNVNGTYVDVSDPSTEFVSGEDDFRSSLTRKEYEFRGERFYLMPQFYGNGWLALTLQSVEDETEYIVLSVNLESMDALDLPDRTFIDVNHYPDAMEFLETNNL 125
10 -2.880PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;  ali follow..  13  45.............................................................................SKVIYRLDGSLYRHMKYDFTYDDQKRVTAKEAFKWDSSTEK-----IPYFKIDYAYSSNEITLVYARWNNSHRAYDDSVEKSVYELNDANMPIAYMN.... 137
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.