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Query: PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete), from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKLGFTLVAALAFSVSAFANNANDTINVAGKWDGTINKAKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTLTEKQYSDYLRLMALTLRNKGIDLast
1 -56.200PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali  100  1MRKLGFTLVAALAFSVSAFANNANDTINVAGKWDGTINKAKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTLTEKQYSDYLRLMALTLRNKGID 118
2 -17.500PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  9  1MKTYVVLMALFLGSQMTLSAQNEENKERPTPEQMMQMQTNQMVRALMLDDATAAKFTPIYEKYLKELRECRMMNFAQSRKMLDIREKYYNEFSKILSQKQIMKIYQQEKSNMNK.... 158
3 -8.990PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  9  1MKRIVSMMVIFTLLLGGMTHVQAQTSKAAXXXXXXXXXXXX--------------------------------XXXRLAKDAVMGEEAFNNAMQAITNRSFV................ 70
4 -8.650PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  3  1MKVKTSILLLLMIATALPSFGGNGNGNGTDSLQATRYVTRATMYGVGYTNVFDTYLSPQ........................................................... 59
5 -8.350HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  14  1MKKLLLAMIAVAALISFAACDHNETYADQRDRELDSINAFLRNENIKVINEAEFE............................................................... 55
6 -7.600PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  18  1MKRNYFFTMLAAVLLAVAGANAQESAEFRPAE...................................................................................... 32
7 -6.600PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  6  1MKKVLVALTMVMGMGSAVAFAQEPVKLPAMEQNQQTSQDKF--TKITVKELPQVVKSTLSKDY....................................................... 61
8 -6.600PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  7  1MKTMKFILACVLLLSPLLCQAQKNLFNKYNDMKGVSSVYKAMMELNPNLFMKDLYIGKVAEH-LNSVQVLSTHDNKVREEMAK-------DIRSLVQSSKYELLMKQKST........ 104
9 -6.480PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  9  1MKTKLVAVIALIFCAFMAEASKVEGNGNIITKEISVDNYSEIE-VFKYTHGRSASLKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLK............. 126
10 -5.810PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  3  1MKTVFNIVLVLCAAALIYIC------------------YSSIMGPINFEKAKKEREQAV----IARLIDIRKAQQEYRSLHHGMYTEHFDTLIDFVKNQKL................. 79
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.