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Query: PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503], from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 | |||||||
# | Score | Template | Links and tools | %id | First | MKKLLCMWMVVCGLLLIPGNMKGQSLKDILNSSAVKNAVTSVTGGKAVTFENLQGTWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNTTLKAINKLASEYDGMMLGFD | Last |
1 | -97.200 | PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] | ali | 100 | 1 | MKKLLCMWMVVCGLLLIPGNMKGQSLKDILNSSAVKNAVTSVTGGKAVTFENLQGTWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNTTLKAINKLASEYDGMMLGFD | 204 |
2 | -14.300 | PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013; | ali follow.. | 13 | 1 | MKRNYFFTMLAAVLLAVAGANAQES--------------------AEFRPAELAGIWQLCHYVSEIPDVPGILKPSNTFK------------------------VLSDDGRIVNFTMIPG-YGTYQQLTDNSYKSIEKNIHLPMLDHKDNILEFEIGDDGVMYL........................................ | 127 |
3 | -8.010 | PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492] | ali follow.. | 17 | 1 | MKKTIFYSLFSALFMLTSCSMFEIDNYEEPSETIWGEVVDEATGKRVLTDQGSEGI--------------RLTELSWGDNVQH-----------------NPDFYCMMDGTFQNT---KIFKGEYNVRIDGPFIPLVRENTDGTLL-HDGSVNTEISGTT-KVKFEVQPFLNVEFVGNPQVSNGVIKAQVRVTR.......... | 160 |
4 | -7.090 | PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184] | ali follow.. | 12 | 1 | MKRIVSMMVIFTLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVM-----AFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTNFVSLNDGQAMIASNSPYPGPNGLGGITVQGSAS-QENNGNVYLSMSVQGIFISA-TVNLVLYSGTNNAMVTVDPNFSGNNLTMNGTLLPYSDSNV-------FQG...... | 194 |
5 | -6.370 | HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861; | ali follow.. | 14 | 1 | MKTLKITFVMLMTALFLVLPSCSKD--DVNVTLTPSEEVVNAFQQKYPDVKNV--KWEITQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAYVEFDEPDSELLINFDGTL............................................................................................ | 162 |
6 | -5.890 | HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455; | ali follow.. | 14 | 1 | MKKLLLAMIAVAALISFAACDHNETYADQRDRE--LDSINAFLRNENI---------------------KVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVIND---CGDYIAKGKTQNVLCRFT................................................................. | 114 |
7 | -5.240 | PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339; | ali follow.. | 11 | 1 | MKTTVLFRMMVLVAMVVAGIANTELKAQ--EKVDDLVVSKVIYRLDGSLYRHMKYDFTYDD--------------QKRVTAKEAFK---DSSTEKWIPYFKIDYAYSSNEITLVYARWNNSHRAYDDSVEKSVYELNDANMPIAYMNYKWNDYKWIEESAGNWAMNIQT-----------------PVTDEADLLLAG...... | 171 |
8 | -5.030 | PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740; | ali follow.. | 10 | 1 | MKTKFIYVVLMALFLGSQMTLSAQN-QRPTPEQMMQMQTNQMVRALMLDDATAAKFTKYLKELRECRMMNFKETPKPVMTDAEIAKMLKDQFA---QSRKMLDIREKYYNEFSKILSQKQIMKIYQQEKS.......................................................................... | 154 |
9 | -4.970 | PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795; | ali follow.. | 11 | 115 | ...................................................DIPESWSSSGEQLVFECENEGIVIDGDTLLPKTAFSGNGERTEYLLPLGRSSVSFYIECGNNGMFGVGRNNNSINPPDDDRYFHLQ------KADLVWPNWQAR------ALYIDFWMLGDAARELPDNSKHRARELGNLVMNMFD....... | 252 |
10 | -4.880 | PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361; | ali follow.. | 9 | 1 | MKIERLFIYCLLAGTSLLASCNSEDMTDNPVETEVVATPQTRVSDYDDTDGKHKSKWD--------GGEVIGVKIGTDGAVGSYTLD----------SDGKPTTSTSNIPAYWQSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLE-HQLVKFRVKLNGDVPNLSDAKVF.............. | 186 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11. |