current user: public
If you have questions about the server, please let us know.

Query: PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200
# Score Template Links and tools%idFirst MKKLLCMWMVVCGLLLIPGNMKGQSLKDILNSSAVKNAVTSVTGGKAVTFENLQGTWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNTTLKAINKLASEYDGMMLGFDLast
1 -97.200PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali  100  1MKKLLCMWMVVCGLLLIPGNMKGQSLKDILNSSAVKNAVTSVTGGKAVTFENLQGTWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNTTLKAINKLASEYDGMMLGFD 204
2 -14.300PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  13  1MKRNYFFTMLAAVLLAVAGANAQES--------------------AEFRPAELAGIWQLCHYVSEIPDVPGILKPSNTFK------------------------VLSDDGRIVNFTMIPG-YGTYQQLTDNSYKSIEKNIHLPMLDHKDNILEFEIGDDGVMYL........................................ 127
3 -8.010PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  17  1MKKTIFYSLFSALFMLTSCSMFEIDNYEEPSETIWGEVVDEATGKRVLTDQGSEGI--------------RLTELSWGDNVQH-----------------NPDFYCMMDGTFQNT---KIFKGEYNVRIDGPFIPLVRENTDGTLL-HDGSVNTEISGTT-KVKFEVQPFLNVEFVGNPQVSNGVIKAQVRVTR.......... 160
4 -7.090PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  12  1MKRIVSMMVIFTLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVM-----AFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTNFVSLNDGQAMIASNSPYPGPNGLGGITVQGSAS-QENNGNVYLSMSVQGIFISA-TVNLVLYSGTNNAMVTVDPNFSGNNLTMNGTLLPYSDSNV-------FQG...... 194
5 -6.370HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  14  1MKTLKITFVMLMTALFLVLPSCSKD--DVNVTLTPSEEVVNAFQQKYPDVKNV--KWEITQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAYVEFDEPDSELLINFDGTL............................................................................................ 162
6 -5.890HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  14  1MKKLLLAMIAVAALISFAACDHNETYADQRDRE--LDSINAFLRNENI---------------------KVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVIND---CGDYIAKGKTQNVLCRFT................................................................. 114
7 -5.240PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;  ali follow..  11  1MKTTVLFRMMVLVAMVVAGIANTELKAQ--EKVDDLVVSKVIYRLDGSLYRHMKYDFTYDD--------------QKRVTAKEAFK---DSSTEKWIPYFKIDYAYSSNEITLVYARWNNSHRAYDDSVEKSVYELNDANMPIAYMNYKWNDYKWIEESAGNWAMNIQT-----------------PVTDEADLLLAG...... 171
8 -5.030PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  10  1MKTKFIYVVLMALFLGSQMTLSAQN-QRPTPEQMMQMQTNQMVRALMLDDATAAKFTKYLKELRECRMMNFKETPKPVMTDAEIAKMLKDQFA---QSRKMLDIREKYYNEFSKILSQKQIMKIYQQEKS.......................................................................... 154
9 -4.970PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  11  115...................................................DIPESWSSSGEQLVFECENEGIVIDGDTLLPKTAFSGNGERTEYLLPLGRSSVSFYIECGNNGMFGVGRNNNSINPPDDDRYFHLQ------KADLVWPNWQAR------ALYIDFWMLGDAARELPDNSKHRARELGNLVMNMFD....... 252
10 -4.880PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  9  1MKIERLFIYCLLAGTSLLASCNSEDMTDNPVETEVVATPQTRVSDYDDTDGKHKSKWD--------GGEVIGVKIGTDGAVGSYTLD----------SDGKPTTSTSNIPAYWQSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLE-HQLVKFRVKLNGDVPNLSDAKVF.............. 186
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.