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Query: PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEIQFVIVRSENAEYLCHNVNGTYVDVSDPSTEFVSGEDDFRLVDPDSSLTRKEYEFRGERFYLMPQFYGNGWLALTLQSVEDETEYIVLSVNLESMDALDLPDRTFIDVNHYPDAMEFLETNNLATYSGYKRRSGFVEYPMAVLNLPLLYQHAPQIFQEANIECLast
1 -105.000PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;  ali  100  1MEIQFVIVRSENAEYLCHNVNGTYVDVSDPSTEFVSGEDDFRLVDPDSSLTRKEYEFRGERFYLMPQFYGNGWLALTLQSVEDETEYIVLSVNLESMDALDLPDRTFIDVNHYPDAMEFLETNNLATYSGYKRRSGFVEYPMAVLNLPLLYQHAPQIFQEANIEC 165
2 -5.400HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  10  24................CSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVTIVIRQKNTPYFLSMDCGYQMKQSITGR................................................. 135
3 -3.620PB014120 _Gut.Meta.Jp.0147711_ gi|163636126|dbj|BABG01000147.1||5 (+ 2345:3428~0 complete)  ali follow..  240.DFMFFVFDIKNFSNIDYDVDFIKCFLRDQKKVKNSIQQEVPYDPVEQKDFDKKILGKSQNRFVLATIPDDKVFEIEMFERGGGR---HMKLSILNEYILSA............................................................... 341
4 -3.150PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  15IAYRCGAFQLLAQMALRRELPEGVAPLTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGEVYISTGSLYLPLGLPASDDFWSQPDAPWT...................................................................... 121
5 -3.100PB012954 Q5LF97_BACFN/1-383 PB012954; Pfam-B_12954;  ali follow..  258.DVLLLRMTLTNRTQIGYTTDFMRFYIQDAKIRKKTAVQQLEQNILFTFDYPEEIPAHESRTFTVATIPDKKRLIIEIQERNGGR---HFLYKLKNKSLLTAEEVFRSRKQETEDEADKILRR.......................................... 381
6 -3.060PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  59MVFGTGLFLLGIFRLFWKSKEVVYVPTGSIAKERSIFFDLKH-----MDKLTDLVNSGSFSADSKIKSEASGNIRMDVILSADNKFAAVQLFQFVPYTYQPVTAVHYFTNDAAAAVAAFLTKSQL........................................ 178
7 -3.050PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;  ali follow..  67.TGQLFMITDQGKKTLTYFISRIPEEKRLKIDHLLNIKKEEFVRNT--------------EIKGEYEKLTDNEYLVKLSVIEQGTPIFNLKLSVGNVKQAKDMCEKWRSDAQYGQIINLLI............................................ 174
8 -2.650PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  11  1MKIKFSFVITS-----CLDDDNNIEYSPDATIHFTIDQLSREIYNEDS----LPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSID...................................................................... 109
9 -2.590PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  1MKIEGTSLLAS-----CNSEDMTDNPVET--LTFTAMQGEVVATPQTRVSDY-----DDTDGKHKSKWDGGEVIGVKIGTDGAVGSYTLDSDG--KPTTSTSNIPAYWQSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLN...... 161
10 -2.330PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;  ali follow..  12  4.ECKITVLETKVFPELCFKAGDEFI............................................................................................................................................ 41

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.