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current user: public |
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Query: PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . | |||||||
# | Score | Template | Links and tools | %id | First | MEIQFVIVRSENAEYLCHNVNGTYVDVSDPSTEFVSGEDDFRLVDPDSSLTRKEYEFRGERFYLMPQFYGNGWLALTLQSVEDETEYIVLSVNLESMDALDLPDRTFIDVNHYPDAMEFLETNNLATYSGYKRRSGFVEYPMAVLNLPLLYQHAPQIFQEANIEC | Last |
1 | -105.000 | PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420; | ali | 100 | 1 | MEIQFVIVRSENAEYLCHNVNGTYVDVSDPSTEFVSGEDDFRLVDPDSSLTRKEYEFRGERFYLMPQFYGNGWLALTLQSVEDETEYIVLSVNLESMDALDLPDRTFIDVNHYPDAMEFLETNNLATYSGYKRRSGFVEYPMAVLNLPLLYQHAPQIFQEANIEC | 165 |
2 | -5.400 | HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280; | ali follow.. | 10 | 24 | ................CSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVTIVIRQKNTPYFLSMDCGYQMKQSITGR................................................. | 135 |
3 | -3.620 | PB014120 _Gut.Meta.Jp.0147711_ gi|163636126|dbj|BABG01000147.1||5 (+ 2345:3428~0 complete) | ali follow.. | 6 | 240 | .DFMFFVFDIKNFSNIDYDVDFIKCFLRDQKKVKNSIQQEVPYDPVEQKDFDKKILGKSQNRFVLATIPDDKVFEIEMFERGGGR---HMKLSILNEYILSA............................................................... | 341 |
4 | -3.150 | PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] | ali follow.. | 8 | 15 | IAYRCGAFQLLAQMALRRELPEGVAPLTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGEVYISTGSLYLPLGLPASDDFWSQPDAPWT...................................................................... | 121 |
5 | -3.100 | PB012954 Q5LF97_BACFN/1-383 PB012954; Pfam-B_12954; | ali follow.. | 7 | 258 | .DVLLLRMTLTNRTQIGYTTDFMRFYIQDAKIRKKTAVQQLEQNILFTFDYPEEIPAHESRTFTVATIPDKKRLIIEIQERNGGR---HFLYKLKNKSLLTAEEVFRSRKQETEDEADKILRR.......................................... | 381 |
6 | -3.060 | PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151; | ali follow.. | 9 | 59 | MVFGTGLFLLGIFRLFWKSKEVVYVPTGSIAKERSIFFDLKH-----MDKLTDLVNSGSFSADSKIKSEASGNIRMDVILSADNKFAAVQLFQFVPYTYQPVTAVHYFTNDAAAAVAAFLTKSQL........................................ | 178 |
7 | -3.050 | PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892; | ali follow.. | 7 | 67 | .TGQLFMITDQGKKTLTYFISRIPEEKRLKIDHLLNIKKEEFVRNT--------------EIKGEYEKLTDNEYLVKLSVIEQGTPIFNLKLSVGNVKQAKDMCEKWRSDAQYGQIINLLI............................................ | 174 |
8 | -2.650 | PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483] | ali follow.. | 11 | 1 | MKIKFSFVITS-----CLDDDNNIEYSPDATIHFTIDQLSREIYNEDS----LPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSID...................................................................... | 109 |
9 | -2.590 | PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361; | ali follow.. | 6 | 1 | MKIEGTSLLAS-----CNSEDMTDNPVET--LTFTAMQGEVVATPQTRVSDY-----DDTDGKHKSKWDGGEVIGVKIGTDGAVGSYTLDSDG--KPTTSTSNIPAYWQSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLN...... | 161 |
10 | -2.330 | PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451; | ali follow.. | 12 | 4 | .ECKITVLETKVFPELCFKAGDEFI............................................................................................................................................ | 41 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |