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Query: PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKEKKSNGEDKILKQDMSQTADHPGMIFMVHLLMEEKCEMPEKEHIHKIMCEHLGETDCFCYDGNMAGFAPQKYSVHYEKEKLNVPPQLIIMNCSEIEKPIMDDVSATQLWNCPNGGEILETCKYQVMATDMLAAGLDYKERAEMLVNYVEALVNIYPSCKAVVFETSKKMLTREDILNCTLPKEMRFLHYAVNIRFFNIQGTNDMLVDSLGMSTLFLPDVQYHFHDLNPNDVVNHAYNVLSYIYDNDNPIEDGNTIAGLTDGNMNSDIKWKVQYENSLIQPIREVIDINTGEYASGNLast
1 -125.000PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;  ali  100  1MKEKKSNGEDKILKQDMSQTADHPGMIFMVHLLMEEKCEMPEKEHIHKIMCEHLGETDCFCYDGNMAGFAPQKYSVHYEKEKLNVPPQLIIMNCSEIEKPIMDDVSATQLWNCPNGGEILETCKYQVMATDMLAAGLDYKERAEMLVNYVEALVNIYPSCKAVVFETSKKMLTREDILNCTLPKEMRFLHYAVNIRFFNIQGTNDMLVDSLGMSTLFLPDVQYHFHDLNPNDVVNHAYNVLSYIYDNDNPIEDGNTIAGLTDGNMNSDIKWKVQYENSLIQPIREVIDINTGEYASGN 298
2 -4.970HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  13  15..............................................................................................................................LFLVLPSCSKDDVNVTLTPSEEVVNAFQQKYPDVKNVKWEILVGAYEAEFIYSGTYSENG--------QHIVLDKVEAQAYITQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAA---KGKKVDDVKLFDWSDRN---------DYFYVEFDEPDSELL------NFDGT 161
3 -3.620HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  11  2......................................................................................................................................................................QTNYKRQRMNIFDIAKQNQEKAWQVIKNTNIIQIWEDAGAKINLVGSLRTGLLDFHIYSSPLNLTDSFQAMARLAENPSIKRIECAN............................................. 94
4 -1.790HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;  ali follow..  6  1.....................................................................................................................................................MDEAVAMAQDAIGLMLEDCEVCPKPSLPSAIHVDTGDFIAMIPFDMEEYQKQFKPVKKTLSI....................................................................................... 62
5 -1.780PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  8  92.......................................................................................................ESVYSFTWNWEDR-------SQYSLRMVYGPGDVSYLDDVWIRGNVLSGYLD............................................................................................................................................... 136
6 -1.740PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  7  34....................................................................................................TRIRKEYIDKFDYTDEQKEEEEDWFGDLVRMMNQEGCRENGHLQINKVVMQALTELHTQLLAEYYRVLPFIVELRGKTKQVADRMAR-KNEANLKEIAANLGHSEVETCFDVLYGVMMLRLQKKEISRETETAVKEITTLIGMLSDYYQKDKTEG........................................... 196
7 -1.330PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  9  317.................................................................................................................VIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALVGGSNYIKQHIEGK-------TTIIFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQN............................................. 452
8 -1.280PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  4  198...........................................................................................................................................................................................................................EVRNVKNMEYMTQACGSLSSMA-----PSMLFANEEL----DRECVTVPFETELHLESSKMTGKFYTFGHHEENARPHK 267
9 -1.190HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  9  19......................................................................................ITCLMATTAFAAGTGDVAGAVEST--WSTASTQIKSVVDNVVFPAI-----DLILAVFFFAKLGTAYFEYRKSAPAILFACLVFTLTAPMYL........................................................................................................................ 109
10 -1.140PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  9  1MKIERL--------------------LLAGTSLLAS-----------------CNSEDMTDNPVETLSEGMYPLTFTAMQGEVVATPQTRVSDYD--------DTDGKHKSKWDGGEV----------IGVKIGTD----GAVGSYTLDSDGKPTTSTSNIPAYWQSTASQNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLN----HQLVKFRVKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYT--------AMLAPSNNFVKIEVYG..... 239
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205